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2015-05-15Merge branch 'master' into compile_odesJohannes Ranke1-1/+1
2015-05-15Remove missing files from svn before commiting to r-forgeJohannes Ranke1-1/+1
2015-05-15Merge branch 'master' into compile_odesJohannes Ranke1-4/+5
Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html
2015-05-15Better description of the release procedureJohannes Ranke1-2/+2
2015-05-15Finished migration from RUnit to testthatJohannes Ranke1-0/+1
2015-05-14Start of migration from RUnit to testthatJohannes Ranke1-2/+2
2015-04-18Add a vignette showing the performance of compiled modelsJohannes Ranke1-1/+4
2014-08-25Remove intermediate vignette files when cleaningJohannes Ranke1-0/+1
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-4/+11
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-14Fix syncinc with r-forgeJohannes Ranke1-1/+1
2014-07-11Update of syncing to r-forge without git-svnJohannes Ranke1-15/+12
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-5/+7
2014-06-30Format the NEWS file in markdown, add Makefile targetJohannes Ranke1-36/+5
2014-06-28Rename ChangeLog to NEWS, new entry style, Makefile updateJohannes Ranke1-1/+1
2014-06-27Add vignettes target, reorganizeJohannes Ranke1-17/+23
2014-06-27Show the upload date and time for winbuilderJohannes Ranke1-0/+1
2014-06-27Simplify and correct targets using $(TGZ) and $(TGZVNR)Johannes Ranke1-9/+6
2014-06-27Only update builds when neededJohannes Ranke1-6/+41
2014-05-08Improve the process of syncing the r-forge branchJohannes Ranke1-1/+1
2014-05-08Support building static documentation, build itJohannes Ranke1-0/+11
2014-05-08Always run tests without rebuilding vignettesJohannes Ranke1-9/+3
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke1-1/+1
- Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup
2013-12-04Make it possible to use different ode solvers=1-3/+19
2013-12-04Add Makefile targets without vignette buildingJohannes Ranke1-8/+9
2013-11-17Conflicts:jranke1-7/+13
README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Vignettes are not built from the makefilejranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@156 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Change quotes to single as backquotes execute automaticallyjranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@155 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Fix quotes in makefilejranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@154 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Test a git commit while svn not up to datejranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@153 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Adapt the makefile to presumed git workflowjranke1-2/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@151 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11- Add a simple makefilejranke1-0/+62
- Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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