| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2015-07-22 | index.r for grouping help topics in static documentation | Johannes Ranke | 1 | -5/+3 | |
| 2015-07-20 | Avoid error message for SFORB in endpoints, updates | Johannes Ranke | 1 | -0/+4 | |
| 2015-07-01 | Corrections in the clean target | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-30 | Improve calculation of DT90 in endpoints(), check and test | Johannes Ranke | 1 | -0/+4 | |
| 2015-06-29 | Do not include plots and R output in README | Johannes Ranke | 1 | -4/+0 | |
| This does not get rendered properly on CRAN, and is easily replaced by links to the static documentation on R-Forge. | |||||
| 2015-06-26 | Rebuilding vignettes with current version is up to the user | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-26 | Copy README figures before starting interactive R for staticdocs | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-26 | Pass R CMD check --as-cran, vignette rebuild | Johannes Ranke | 1 | -2/+2 | |
| 2015-06-26 | More plotting in help files, fix Make- and .*ignore files | Johannes Ranke | 1 | -4/+5 | |
| 2015-06-25 | Small fixes | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-25 | Do not convert NEWS.md any more as it is now rendered on CRAN | Johannes Ranke | 1 | -4/+1 | |
| via wch/r-source@9ffe87264a1cd59a31a829f72d57af0f1bfa327a | |||||
| 2015-06-25 | Rename quick install target to quickinstall | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-25 | Fix build targets in Makefile | Johannes Ranke | 1 | -1/+0 | |
| 2015-06-24 | Staticdocs site_path argument in build_site() now works | Johannes Ranke | 1 | -7/+6 | |
| This long-standing issue finally got fixed in 2f56137fc9ba60bfea54e575d233f4e696bb8a5a | |||||
| 2015-06-23 | Version bump, keep logs of build, check and test | Johannes Ranke | 1 | -3/+3 | |
| 2015-06-23 | Remove Rplots.pdf that is being built by staticdocs | Johannes Ranke | 1 | -0/+2 | |
| 2015-06-23 | Also copy figures generated by README.Rmd for staticdocs index | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Rename the check-no-vignettes target to quickcheck | Johannes Ranke | 1 | -2/+2 | |
| and do not check using the --as-cran option to skip the check for CRAN incoming feasibility. | |||||
| 2015-06-22 | Another reorganisation of vignette building by GNUmakefile | Johannes Ranke | 1 | -20/+29 | |
| 2015-06-22 | Watch the vignettes built locally as well for building | Johannes Ranke | 1 | -0/+2 | |
| 2015-06-22 | Version bump, correct benchmark in vignette/compiled_models | Johannes Ranke | 1 | -27/+10 | |
| Reorganisation of the vignette generation in the Makefile. Improved YAML header in the R markdown vignettes. Rebuilt vignettes with the package installed. | |||||
| 2015-06-20 | Low-level generation of compiled models | Johannes Ranke | 1 | -1/+5 | |
| As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled. | |||||
| 2015-06-05 | Add a simple vignette with an evaluation of FOCUS D | Johannes Ranke | 1 | -1/+4 | |
| 2015-05-19 | Include output in README, use mkinsub() in example code | Johannes Ranke | 1 | -1/+4 | |
| 2015-05-18 | Make checking faster, testing is done by tests | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Remove missing files from svn before commiting to r-forge | Johannes Ranke | 1 | -1/+1 | |
| 2015-05-15 | Merge branch 'master' into compile_odes | Johannes Ranke | 1 | -4/+5 | |
| Conflicts (resolved manually, deleting code that I had integrated into the RUnit tests for testing the compiled version): .gitignore DESCRIPTION inst/unitTests/runit.mkinerrmin.R inst/unitTests/runit.mkinfit.R tests/testthat/test_mkinpredict_SFO_SFO.R vignettes/FOCUS_L.html | |||||
| 2015-05-15 | Better description of the release procedure | Johannes Ranke | 1 | -2/+2 | |
| 2015-05-15 | Finished migration from RUnit to testthat | Johannes Ranke | 1 | -0/+1 | |
| 2015-05-14 | Start of migration from RUnit to testthat | Johannes Ranke | 1 | -2/+2 | |
| 2015-04-18 | Add a vignette showing the performance of compiled models | Johannes Ranke | 1 | -1/+4 | |
| 2014-08-25 | Remove intermediate vignette files when cleaning | Johannes Ranke | 1 | -0/+1 | |
| 2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 1 | -4/+11 | |
| - The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
| 2014-07-14 | Fix syncinc with r-forge | Johannes Ranke | 1 | -1/+1 | |
| 2014-07-11 | Update of syncing to r-forge without git-svn | Johannes Ranke | 1 | -15/+12 | |
| 2014-07-02 | Support formation fractions without sink pathway, updates | Johannes Ranke | 1 | -5/+7 | |
| 2014-06-30 | Format the NEWS file in markdown, add Makefile target | Johannes Ranke | 1 | -36/+5 | |
| 2014-06-28 | Rename ChangeLog to NEWS, new entry style, Makefile update | Johannes Ranke | 1 | -1/+1 | |
| 2014-06-27 | Add vignettes target, reorganize | Johannes Ranke | 1 | -17/+23 | |
| 2014-06-27 | Show the upload date and time for winbuilder | Johannes Ranke | 1 | -0/+1 | |
| 2014-06-27 | Simplify and correct targets using $(TGZ) and $(TGZVNR) | Johannes Ranke | 1 | -9/+6 | |
| 2014-06-27 | Only update builds when needed | Johannes Ranke | 1 | -6/+41 | |
| 2014-05-08 | Improve the process of syncing the r-forge branch | Johannes Ranke | 1 | -1/+1 | |
| 2014-05-08 | Support building static documentation, build it | Johannes Ranke | 1 | -0/+11 | |
| 2014-05-08 | Always run tests without rebuilding vignettes | Johannes Ranke | 1 | -9/+3 | |
| 2014-02-27 | Format of gmkin workspace files, copyright, updates | Johannes Ranke | 1 | -1/+1 | |
| - Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup | |||||
| 2013-12-04 | Make it possible to use different ode solvers | = | 1 | -3/+19 | |
| 2013-12-04 | Add Makefile targets without vignette building | Johannes Ranke | 1 | -8/+9 | |
| 2013-11-17 | Conflicts: | jranke | 1 | -7/+13 | |
| README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
| aboutsummaryrefslogtreecommitdiff |
path: root/GNUmakefile