mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2015-06-20	Low-level generation of compiled models	Johannes Ranke	1	-1/+2
	As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-04-18	Add a vignette showing the performance of compiled models	Johannes Ranke	1	-3/+2

2015-04-14	Compile differential equation models with ccSolve package	Johannes Ranke	1	-1/+2
	If the ccSolve package is available, and time is not in the right hand side of the equations (i.e. if only SFO and SFORB models are used), the differential equation model is compiled from auto-generated C code. Currently, one test (FOCUS 2006 D SFO_SFO) fails
2015-02-21	Avoid NOTES in R CMD check	Johannes Ranke	1	-0/+3
	- Export S3 methods - Avoid using undeclared variable names
2014-04-25	McCall 2,4,5-T dataset, lower bound for transform_rates=FALSE	Johannes Ranke	1	-1/+2

2013-09-25	- Fixed the NOTES listed by R CMD check	jranke	1	-4/+2
	Candidate for publication on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@97 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-11	- Testing of the new fitting process with transformed parameters shows that ↵	jranke	1	-1/+11
	it is less stable than the way of fitting used in mkin 0.8. Presumably this is due to the frequent presence of products of two parameters (formation fractions and kinetic rate constants) in the differential equations. - mkinmod documentation was adapted to the new version - Introduce vim fold markers to the mkinmod source for convenience git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@24 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-10	- Fitting and summaries now work with the new parameter transformations.	jranke	1	-0/+1
	- The SFORB models with metabolites is broken (see TODO) - Moved the vignette to the location recommended since R 2.14 - Added the missing documentation - Commented out the schaefer_complex_case test, as this version of mkin is not able to fit a model without sink and therefore mkin estimated parameters are quite different git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb