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2023-04-15Update description and newsJohannes Ranke1-2/+6
2023-04-02Deal with covariates in summary for saem.mmkin objectsJohannes Ranke1-2/+2
2023-04-01Update tests on 5950xJohannes Ranke1-1/+1
Update platform dependent test plots
2023-03-23Support covariates in endpoints()Johannes Ranke1-1/+3
2023-03-22Fix typo in mkinerrminJohannes Ranke1-0/+2
Thanks to Sebastian Meyer for spotting it.
2023-02-17Rethink versioning and remove 7950X benchmarksJohannes Ranke1-1/+1
I will add benchmark data for 1.2.0, 1.2.2 and 1.2.3 for better comparison
2023-02-17Mention deSolve development in NEWSJohannes Ranke1-2/+6
2022-12-19Rename template folder, create formatJohannes Ranke1-0/+4
Instead of rmarkdown::pdf_document, mkin::hierarchical_kinetics is used as a document format in the template. In this way, the template file can be freed from some R code and yaml options that the average user does not have to be aware of.
2022-12-15List random effects correlations in output if anyJohannes Ranke1-1/+3
Update docs
2022-12-07Fix parplot for the case of failed multistart runsJohannes Ranke1-0/+2
2022-12-07Check slopes in saemix covariate modelsJohannes Ranke1-0/+2
2022-12-06Some parplot improvementsJohannes Ranke1-0/+2
llquant argument, improved legend text, tests
2022-12-02Avoid redundant warnings in summariesJohannes Ranke1-1/+1
2022-12-01Possibility to manually specify no_random_effects in mhmkinJohannes Ranke1-1/+1
2022-11-29Complete starting values in summary for saem.mmkin fitsJohannes Ranke1-1/+3
Also update tests to the changes in mhmkin (see NEWS)
2022-11-25mhmkin: Easy specification of ill-defined parmsJohannes Ranke1-1/+1
The argument 'no_random_effect' now accepts an illparms.mhmkin object
2022-11-22Start new development versionJohannes Ranke1-1/+5
2022-11-18Use cluster with two cores to reduce windows check timeJohannes Ranke1-0/+2
2022-11-18Round parameters with signif() before printingJohannes Ranke1-1/+3
This will hopefully make the test pass on all relevant platforms.
2022-11-18Update NEWSJohannes Ranke1-0/+10
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-1/+1
2022-11-16Update DESCRIPTION and NEWS, check and testJohannes Ranke1-6/+6
2022-11-14Automatic starting parameters for saem.mmkinJohannes Ranke1-0/+2
For the case of mkin transformations. This gives faster convergence, and appears to avoid problems with numeric ODE solutions
2022-11-01Add tex_listing()Johannes Ranke1-0/+4
2022-10-31Add anova.mhmkin methodJohannes Ranke1-0/+2
2022-10-29Next version will be 1.2.0, complete NEWSJohannes Ranke1-7/+7
2022-10-28Rename parhist to parplot and make it genericJohannes Ranke1-2/+2
That parhist name was not the brightest idea, as it does not show histograms.
2022-09-16Diagnostic plots for multistart methodJohannes Ranke1-1/+1
2022-08-11Start a multistart methodJohannes Ranke1-0/+2
2022-08-10Batch processing for hierarchical fitsJohannes Ranke1-2/+6
- 'R/mhmkin.R': New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel. - 'R/saem.R': 'logLik' and 'update' methods for 'saem.mmkin' objects. - 'R/illparms.R': Add methods for 'saem.mmkin' and 'mhmkin' objects. tests: Use 2 cores on travis, should work according to docs
2022-08-08Error on unsupported saemix transformationsJohannes Ranke1-1/+1
Also, support FOMC with saemix transformations
2022-08-08Fix fitting HS with saemix transformationsJohannes Ranke1-0/+2
2022-07-23r-universe badge, release date of v1.1.1 in NEWSJohannes Ranke1-1/+1
Also skip complete log directory in .Rbuildignore and reorganize that file to improve readability
2022-07-21Summary method for mmkin objectsJohannes Ranke1-0/+8
Also, add a method for gathering convergence information and a method for gathering information on ill-defined parameters
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-0/+2
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-0/+4
This also adds the first benchmark results obtained on my laptop system
2022-04-13More control of y axes in plot.mkinfit, updatesJohannes Ranke1-0/+2
Documentation and test results were updated, the latter with regard to the previous work on plot.mixed.mmkin.
2022-04-09Improvements to mean_degparms() and plot.mixed.mmkin()Johannes Ranke1-0/+4
- New argument 'default_log_parms' for mean_degparms() - 'plot.mixed.mmkin': Pass the frame argument also to residual plots, take the 'default_log_parms' argument for 'mean_degparms' used for constructing approximate population curves, plot population curve last to avoid that it is covered by data
2022-03-19Test saemix without special analytical solutionsJohannes Ranke1-0/+2
Also increase the performance a bit (from about 210 s to about 140 s in the case of DFOP with four chains and 300, 100 iterations).
2022-03-19Improvements to CAKE_export()Johannes Ranke1-0/+2
2022-03-16Use saemix in help page, typo in vignetteJohannes Ranke1-1/+5
2022-03-14Release date of mkin 1.1.0Johannes Ranke1-1/+1
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-3/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-02-28Update docsJohannes Ranke1-1/+1
2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke1-0/+2
2021-09-16Merge branch 'master' into nlmixrJohannes Ranke1-1/+5
2021-09-15Fix Open EFSA URL, changelog for 1.0.5v1.0.5Johannes Ranke1-0/+4
The EFSA URL failed on winbuilder because some cookie sets a different domain, so I am now using \href{} with the full link as link text instead of \url{}
2021-07-29Go back to 1.0.x version, update docsJohannes Ranke1-0/+2
2021-07-27Publication date for 1.0.4 in NEWS, update docsJohannes Ranke1-1/+1
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke1-1/+1

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