mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2021-02-04	Documentation improvements, mainly fixing example code	Johannes Ranke	1	-4/+4
	The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2020-05-26	Use all cores per default, confint tolerance	Johannes Ranke	1	-39/+47
	Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2019-11-04	Include fixed parameters in model names in lrtest	Johannes Ranke	1	-4/+4

2019-11-01	Another documentation fix	Johannes Ranke	1	-3/+2

2019-11-01	Make the 'quadratic' the default for 'confint'	Johannes Ranke	1	-29/+35
	Also the documentation was improved here and there
2019-10-31	Add likelihood ratio test and other methods, fixes	Johannes Ranke	1	-1/+2
	The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added.
2019-10-29	Return single parameters correctly from confint	Johannes Ranke	1	-11/+15
	Static documentation rebuilt by pkgdown
2019-10-28	Parallel computation for confidence intervals	Johannes Ranke	1	-18/+82
	Only on Linux at the moment. Some more examples in the help page. Remove the distribution argument for the quadratic method
2019-10-28	Improve formatting	Johannes Ranke	1	-0/+1

2019-10-28	Fix the cutoff for likelihood based intervals	Johannes Ranke	1	-4/+16
	The cutoff now matches what is given by Venzon and Moolgavkar (1988). Also, confidence intervals closely match intervals obtained with stats4::confint in the test case where an stats4::mle object is created from the likelihood function in one test case. Static documentation rebuilt by pkgdown
2019-10-26	Fix checks and tests	Johannes Ranke	1	-1/+3
	Static documentation rebuilt by pkgdown
2019-10-26	Address some check and test failures	Johannes Ranke	1	-0/+2

2019-10-26	parms and confint methods	Johannes Ranke	1	-0/+139
	The confint method can do profile likelihood based confidence intervals!