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2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke1-2/+2
2021-02-06Reintroduce interface to saemixJohannes Ranke1-4/+4
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-4/+4
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-11-08Improve saem method, add summaryJohannes Ranke1-49/+38
Also make the endpoints function work for saem objects.
2020-09-01Back-calculated DT50 values for biphasic modelsJohannes Ranke1-1/+10
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-04-15Adapt endpoint() to also work for nlme.mmkin objectsJohannes Ranke1-8/+31
2020-04-03Compiled models article, reduce distractionsJohannes Ranke1-9/+11
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2019-10-25Use roxygen for functions and methodsJohannes Ranke1-178/+199
2019-02-22Further adaptations for the logistic modelJohannes Ranke1-0/+5
- Make mmkin compatible - Return DT50 values corresponding to k0 and kmax - Turn incompatible parameter names in parms.ini from an error to a warning, in order to make it possible to use this argument in calls to mmkin
2019-02-21Add the logistic modelJohannes Ranke1-0/+8
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-6/+6
Also ignore test.R in the top level directory, as it is not meant to be public
2016-06-09Fix a bug in the listing of formation fractionsJohannes Ranke1-4/+4
The bug could only occur if a parent compound with a metabolite would end in the letter 'f' and was therefore not noticed earlier
2015-07-20Avoid error message for SFORB in endpoints, updatesJohannes Ranke1-7/+14
2015-06-30Improve calculation of DT90 in endpoints(), check and testJohannes Ranke1-16/+22
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-1/+1
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke1-3/+25
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-11/+13
2014-06-27Reorder endpoints in R/endpoints.R, update vignettesJohannes Ranke1-2/+2
2014-06-26Avoid calculation of formation fractions if fittedJohannes Ranke1-3/+5
2014-06-26Fix naming of SFORB DT50_bx values, fix docsJohannes Ranke1-2/+2
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-2/+20
2013-04-14- Update the TODO list, setting some requirements for version 1.0jranke1-0/+14
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-02-18- Completion of the multicompartment part of the mkin examples vignettejranke1-1/+1
- Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-06-18Put the calculation of dissipation times, formation fractions and SFORB ↵jranke1-0/+94
eigenvalues into a separate function Some testing of this functionality in test.R git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@40 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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