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2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke1-2/+7
2014-11-12Merge branch 'master' into ioreJohannes Ranke1-48/+127
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke1-1/+1
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-1/+1
2014-10-14Further formatting improvement for differential equationsJohannes Ranke1-1/+1
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke1-7/+9
2014-08-20Fix mkinfit for a special situationJohannes Ranke1-7/+7
2014-08-19Improve formatting of differential equations in outputJohannes Ranke1-1/+1
2014-07-24Bump version, better default for state.iniJohannes Ranke1-2/+8
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-3/+24
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-35/+82
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke1-19/+17
2014-07-14Bugfix release version 0.9-31Johannes Ranke1-19/+17
2014-07-12First working fits with IORE modelJohannes Ranke1-1/+3
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke1-23/+16
2014-07-02Warning -> message, and only if initial parameter was not 1Johannes Ranke1-2/+4
2014-07-02Set implicit formation fraction to 1 even if set otherwise in parms.iniJohannes Ranke1-6/+8
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke1-13/+11
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-50/+113
2014-07-01One more source code commentJohannes Ranke1-0/+2
2014-06-27Reorganize the summary in a more logical orderJohannes Ranke1-19/+19
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke1-3/+15
2014-05-09Set upper and lower boundx for untransformed fractionsJohannes Ranke1-3/+16
2014-04-30Fix of bug introduced with t-testJohannes Ranke1-1/+1
2014-04-30Restore t-test (1- and 2-sided) for fitted parametersJohannes Ranke1-3/+6
2014-04-25McCall 2,4,5-T dataset, lower bound for transform_rates=FALSEJohannes Ranke1-2/+11
2014-04-22Possibility to fit without parameter transformationJohannes Ranke1-8/+26
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke1-0/+1
2014-01-22Merge branch 'master' of https://github.com/jranke/mkinJohannes Ranke1-3/+5
2014-01-17- Use mkinmod$spec instead of mkinmod$map wherever possible, in order to make...Johannes Ranke1-4/+4
2013-12-04Make it possible to use different ode solvers=1-3/+5
2013-11-13Squashed commit of the following:jranke1-0/+2
2013-11-05- Use an increasing small numeric value instead of random numbers for generat...jranke1-1/+5
2013-11-04Add small random numbers to default initial values for rate constants to avoidjranke1-2/+2
2013-11-04Bugfix for a recently introduced breakage of fixed_initialsjranke1-1/+4
2013-10-30- Backtransform fixed ODE parameters for the summary (compare ChangeLog)jranke1-2/+2
2013-10-29- Just one little formatting change in mkinfit.Rjranke1-1/+2
2013-10-17- Fix reweighting for the case of many metabolitesjranke1-1/+1
2013-10-16- More consistent output regarding optimised and fixed parameters (see Change...jranke1-4/+9
2013-10-10- IRLS is implementedjranke1-14/+58
2013-10-10- Added a ChangeLogjranke1-16/+33
2013-06-18Pending check-in of stuff started at east one month ago:jranke1-0/+3
2013-04-14- Update the TODO list, setting some requirements for version 1.0jranke1-2/+12
2013-03-15Add the solution type used in the fit to the summaryjranke1-0/+4
2013-03-12Improve formatting of data in print.summary.mkinfit()jranke1-1/+1
2013-03-05- Calculate confidence intervals for parameters based on the t distributionjranke1-22/+37
2013-02-21Make the use of globalVariable() conditional on R Version >= 2.15.1,jranke1-1/+1
2013-02-18- Completion of the multicompartment part of the mkin examples vignettejranke1-9/+13

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