aboutsummaryrefslogtreecommitdiff
path: root/R/mkinfit.R
AgeCommit message (Expand)AuthorFilesLines
2016-11-17Remove trailing whitespace, clean headersJohannes Ranke1-45/+45
2016-06-27Improve listing of weights in output, update NEWSJohannes Ranke1-1/+7
2016-06-17Change the title of the package, small bugfixJohannes Ranke1-1/+1
2016-04-21Avoid unnecessary stop in edge case, improve warningsJohannes Ranke1-6/+14
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke1-1/+14
2015-11-06Improve formatting of summaryJohannes Ranke1-4/+4
2015-10-21Avoid an error printing old mkinfit summariesJohannes Ranke1-5/+10
2015-06-30Start to import or qualify functions from stats, utils et al.Johannes Ranke1-2/+2
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-18/+71
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-3/+3
2015-04-16Update copyright header, improve documentation of solution_typeJohannes Ranke1-12/+17
2015-04-16Check compiled mkinmod versions in examples and testsJohannes Ranke1-0/+3
2015-02-20Add termination message to mkinfit, prepare releaseJohannes Ranke1-1/+9
2015-02-20Fix printing the summary if iterations are not availableJohannes Ranke1-1/+4
2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke1-2/+7
2014-11-12Merge branch 'master' into ioreJohannes Ranke1-48/+127
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke1-1/+1
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-1/+1
2014-10-14Further formatting improvement for differential equationsJohannes Ranke1-1/+1
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke1-7/+9
2014-08-20Fix mkinfit for a special situationJohannes Ranke1-7/+7
2014-08-19Improve formatting of differential equations in outputJohannes Ranke1-1/+1
2014-07-24Bump version, better default for state.iniJohannes Ranke1-2/+8
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-3/+24
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-35/+82
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke1-19/+17
2014-07-14Bugfix release version 0.9-31Johannes Ranke1-19/+17
2014-07-12First working fits with IORE modelJohannes Ranke1-1/+3
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke1-23/+16
2014-07-02Warning -> message, and only if initial parameter was not 1Johannes Ranke1-2/+4
2014-07-02Set implicit formation fraction to 1 even if set otherwise in parms.iniJohannes Ranke1-6/+8
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke1-13/+11
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-50/+113
2014-07-01One more source code commentJohannes Ranke1-0/+2
2014-06-27Reorganize the summary in a more logical orderJohannes Ranke1-19/+19
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke1-3/+15
2014-05-09Set upper and lower boundx for untransformed fractionsJohannes Ranke1-3/+16
2014-04-30Fix of bug introduced with t-testJohannes Ranke1-1/+1
2014-04-30Restore t-test (1- and 2-sided) for fitted parametersJohannes Ranke1-3/+6
2014-04-25McCall 2,4,5-T dataset, lower bound for transform_rates=FALSEJohannes Ranke1-2/+11
2014-04-22Possibility to fit without parameter transformationJohannes Ranke1-8/+26
2014-02-27Format of gmkin workspace files, copyright, updatesJohannes Ranke1-0/+1
2014-01-22Merge branch 'master' of https://github.com/jranke/mkinJohannes Ranke1-3/+5
2014-01-17- Use mkinmod$spec instead of mkinmod$map wherever possible, in order to make...Johannes Ranke1-4/+4
2013-12-04Make it possible to use different ode solvers=1-3/+5
2013-11-13Squashed commit of the following:jranke1-0/+2
2013-11-05- Use an increasing small numeric value instead of random numbers for generat...jranke1-1/+5
2013-11-04Add small random numbers to default initial values for rate constants to avoidjranke1-2/+2

Contact - Imprint