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Fitting kinetic models to chemical degradation data (also on github)
Johannes Ranke
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mkinpredict.R
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2022-11-16
We get about 25% performance gain
Johannes Ranke
1
-24
/
+83
2022-11-04
Make it easy to override maxsteps for lsoda
Johannes Ranke
1
-23
/
+26
2022-07-08
Store DLL info in mkinmod objects for performance
Johannes Ranke
1
-1
/
+2
2020-12-09
Make saem using mkinpredict work again
Johannes Ranke
1
-1
/
+3
2020-12-07
Attempt to be more failsafe in saemix runs
Johannes Ranke
1
-2
/
+8
2020-11-27
Improved way to have persistent DLLs for mkinmod
Johannes Ranke
1
-7
/
+2
2020-11-24
Support storing mkinmod compiled code as CFunc objects
Johannes Ranke
1
-6
/
+11
2020-11-07
Create saem generic for fitting saemix models
Johannes Ranke
1
-7
/
+3
2020-11-07
Make deSolve predictions within saemix robust
Johannes Ranke
1
-2
/
+11
2020-05-18
Add comment
Johannes Ranke
1
-1
/
+2
2020-05-12
Improve documentation, now using a spell checker
Johannes Ranke
1
-1
/
+1
2020-05-11
Avoid merge() and data.frame() in cost function
Johannes Ranke
1
-22
/
+26
2020-05-09
Avoid the call to merge for analytical solutions
Johannes Ranke
1
-2
/
+15
2020-05-09
Make mkinpredict consistently return a dataframe
Johannes Ranke
1
-16
/
+16
2020-05-07
Another overhaul of analytical solutions
Johannes Ranke
1
-11
/
+11
2020-05-06
Change implementation of analytical solutions
Johannes Ranke
1
-91
/
+61
2020-05-06
Formatting, README update, color palette of R 4.x
Johannes Ranke
1
-32
/
+32
2019-10-25
Use roxygen for functions and methods
Johannes Ranke
1
-19
/
+100
2019-02-21
Add the logistic model
Johannes Ranke
1
-2
/
+6
2018-09-18
Make mkinpredict generic and write a method for fits
Johannes Ranke
1
-25
/
+52
2016-11-17
Remove trailing whitespace, clean headers
Johannes Ranke
1
-13
/
+13
2015-06-20
Low-level generation of compiled models
Johannes Ranke
1
-16
/
+27
2015-04-16
Order of parameters needs to be right for compiled models
Johannes Ranke
1
-1
/
+1
2015-04-16
Update copyright header, improve documentation of solution_type
Johannes Ranke
1
-1
/
+1
2015-04-16
Check compiled mkinmod versions in examples and tests
Johannes Ranke
1
-1
/
+2
2015-04-14
Compile differential equation models with ccSolve package
Johannes Ranke
1
-9
/
+13
2014-07-14
Nearly complete support for IORE, pending mkinerrmin
Johannes Ranke
1
-0
/
+4
2014-07-12
First working fits with IORE model
Johannes Ranke
1
-0
/
+6
2014-02-27
Format of gmkin workspace files, copyright, updates
Johannes Ranke
1
-1
/
+2
2013-12-04
Make it possible to use different ode solvers
=
1
-4
/
+6
2013-11-04
Complete the fix for fixing initial values for state variables
jranke
1
-0
/
+5
2012-07-03
- Add rtol argument in order to increase the precision of deSolve based
jranke
1
-1
/
+2
2012-04-25
- Transferred some testing code from test.R to unit tests for mkinpredict
jranke
1
-4
/
+4
2012-04-24
- Added the reference fit data for FOCUS 2006 datasets from the kinfit package
jranke
1
-1
/
+21
2012-04-23
- Fixed a couple of things
jranke
1
-1
/
+3
2012-04-10
- Fitting and summaries now work with the new parameter transformations.
jranke
1
-0
/
+90
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