| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2022-04-13 | More control of y axes in plot.mkinfit, updates | Johannes Ranke | 1 | -6/+11 | |
| Documentation and test results were updated, the latter with regard to the previous work on plot.mixed.mmkin. | |||||
| 2021-03-31 | Bug fix in plot.mkinfit | Johannes Ranke | 1 | -1/+1 | |
| In residual plots, use xlab and xlim if appropriate | |||||
| 2021-02-24 | Reset graphical parameters with on.exit() | Johannes Ranke | 1 | -1/+1 | |
| plot.mixed.mmkin did not reset graphical parameters at all. The other plotting functions did not use on.exit, so this change should make the use of the plotting functions safer. | |||||
| 2021-01-25 | Some more plotting improvements | Johannes Ranke | 1 | -1/+1 | |
| 2021-01-25 | Change default ylab in plot.mkinfit, explicit ylab for plot.mmkin | Johannes Ranke | 1 | -1/+1 | |
| See NEWS.md. Closes #12 | |||||
| 2020-11-12 | mkindsg class to hold groups of datasets | Johannes Ranke | 1 | -1/+1 | |
| - D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU assessment as mkindsg object with metadata - f_time_norm_focus() to do time-step normalisation using the FOCUS method - focus_soil_moisture data with default moisture contents at pF1, pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance - Dataset generation scripts in inst/dataset_generation - Depend on R >= 2.15.1 in order to facilitate the use of utils::globalVariables() | |||||
| 2020-05-11 | Avoid merge() and data.frame() in cost function | Johannes Ranke | 1 | -0/+1 | |
| also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette. | |||||
| 2020-05-09 | Avoid the call to merge for analytical solutions | Johannes Ranke | 1 | -0/+1 | |
| This increases performance up to a factor of five! | |||||
| 2019-11-05 | Fix standardized residual plots in 'plot_res' | Johannes Ranke | 1 | -3/+5 | |
| 2019-11-04 | Scaled residual plots | Johannes Ranke | 1 | -9/+26 | |
| 2019-10-25 | Use roxygen for functions and methods | Johannes Ranke | 1 | -19/+107 | |
| 2019-10-21 | Improve some plotting routines, more tests | Johannes Ranke | 1 | -22/+22 | |
| Static documentation rebuilt by pkgdown | |||||
| 2019-09-02 | Some changes to improve plots on beamer slides | Johannes Ranke | 1 | -4/+5 | |
| 2019-05-08 | Add functionality to plot the error model | Johannes Ranke | 1 | -5/+14 | |
| by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs | |||||
| 2017-09-06 | Use full fitted curve(s) for y axis scaling ... | Johannes Ranke | 1 | -2/+1 | |
| ... when using plot_sep() or plot.mkinfit(..., sep_obs = TRUE) | |||||
| 2017-09-06 | Fix scaling of residual plots ... | Johannes Ranke | 1 | -2/+6 | |
| ... in the case of separate plots for each observed variable as obtained with plot_sep() or plot.mkinfit(..., sep_obs = TRUE) | |||||
| 2016-12-07 | Use latex in plots when using tikzDevice | Johannes Ranke | 1 | -2/+9 | |
| 2016-11-17 | Remove trailing whitespace, clean headers | Johannes Ranke | 1 | -16/+16 | |
| Also ignore test.R in the top level directory, as it is not meant to be public | |||||
| 2016-09-10 | Plot using R model if compiled model is not available | Johannes Ranke | 1 | -2/+9 | |
| 2016-06-28 | Convenience wrapper plot_sep, further vignette updates | Johannes Ranke | 1 | -0/+6 | |
| 2016-06-27 | Show chi2 in plot.mkinfit, round with signif | Johannes Ranke | 1 | -1/+18 | |
| 2016-06-25 | Fix the plot margins for combined plots | Johannes Ranke | 1 | -0/+21 | |
| 2016-06-25 | Now the old behaviour is restored for compatibility reasons | Johannes Ranke | 1 | -10/+17 | |
| When observed variables are not shown in separate plots, the residual plot is shown in the lower third of the total plotting area | |||||
| 2016-06-25 | Working state, but not backwards compatible | Johannes Ranke | 1 | -48/+88 | |
| In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored. | |||||
| 2015-10-19 | Make plot.mkinfit work with models where full_name components are NULL | Johannes Ranke | 1 | -0/+2 | |
| 2015-10-16 | Full compound names in models that are shown in the plot | Johannes Ranke | 1 | -2/+6 | |
| 2014-08-29 | Avoid an unnecessary warning | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-29 | Restore graphics parameters after plotting with residuals | Johannes Ranke | 1 | -0/+2 | |
| 2014-04-29 | Fix y label in optional residual plot of plot.mkinfit | Johannes Ranke | 1 | -1/+1 | |
| 2014-04-28 | Option to add residual plot to plot.mkinfit | Johannes Ranke | 1 | -1/+27 | |
| 2014-04-26 | Fix the default case for obs_vars in plot.mkinfit() | Johannes Ranke | 1 | -11/+5 | |
| 2014-04-26 | Enable selection of observed variables to plot | Johannes Ranke | 1 | -11/+14 | |
| 2013-11-04 | Complete the fix for fixing initial values for state variables | jranke | 1 | -1/+4 | |
| git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@133 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-10-17 | - See ChangeLog entry for today (2 small bugfixes and lots of GUI progress) | jranke | 1 | -1/+1 | |
| git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@117 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-03-04 | Introduce the possibility to place the legend with mkin using arguments lpos ↵ | jranke | 1 | -2/+3 | |
| and inset git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@72 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-02-21 | Make the use of globalVariable() conditional on R Version >= 2.15.1, | jranke | 1 | -1/+2 | |
| in order to make mkin build on such R versions again. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@70 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-02-18 | - Completion of the multicompartment part of the mkin examples vignette | jranke | 1 | -3/+2 | |
| - Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-02-18 | - Fix the line types in plot.mkinfit again. | jranke | 1 | -1/+2 | |
| git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@64 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-02-17 | - Added the examples vignette to the kinfit package | jranke | 1 | -0/+23 | |
| - Added calls to utils::globalVariables to make R CMD check pass cleanly without NOTES git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@62 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2013-02-16 | - Some maintenance fixes | jranke | 1 | -2/+2 | |
| - Start of the examples vignette git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@61 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
| 2012-11-26 | - Added an S3 plot method for mkinfit models | jranke | 1 | -0/+45 | |
| - Fixed a bug in the mkinfit summary method which crashed on missing covariance matrices git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@58 edb9625f-4e0d-4859-8d74-9fd3b1da38cb | |||||
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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