mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2021-03-09	Some improvements for borderline cases	Johannes Ranke	1	-5/+26
	- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-06	Reintroduce interface to saemix	Johannes Ranke	1	-0/+512
	Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-03	Prepare for v1.0.0v1.0.0	Johannes Ranke	1	-512/+0
	- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2021-01-22	We do not need to suppress saemix plots any more	Johannes Ranke	1	-12/+1
	This makes fitting with saem within parallel::mclapply much faster and, surprisingly, much less hungry for RAM.
2020-12-19	Possibility to override automatic starting parameters for saem	Johannes Ranke	1	-4/+10

2020-12-15	Remove leftovers	Johannes Ranke	1	-3/+2

2020-12-09	Make saem using mkinpredict work again	Johannes Ranke	1	-46/+51
	I threw out mclapply as it did not play well with the linear algebra routines used in the saemix code. Most of the change is actually indentation in the code creating the model function. But there is an important fix in mkinpredict which I had broken.
2020-12-09	Add more tests and fix HS in saem	Johannes Ranke	1	-2/+2

2020-12-08	mixed.mmkin and test coverage	Johannes Ranke	1	-1/+3

2020-12-07	Possibility to use saemix transformations in some cases	Johannes Ranke	1	-45/+127
	Namely for SFO, DFOP, SFO-SFO and DFOP-SFO
2020-11-13	More work on f_time_norm_focus	Johannes Ranke	1	-0/+2

2020-11-13	Annotation of the fix	Johannes Ranke	1	-1/+1

2020-11-13	Fixed plotting of non-analytical solutions in saem	Johannes Ranke	1	-11/+20

2020-11-12	mkindsg class to hold groups of datasets	Johannes Ranke	1	-1/+1
	- D24_2014 dataset on aerobic soil degradation of 2,4-D from the EU assessment as mkindsg object with metadata - f_time_norm_focus() to do time-step normalisation using the FOCUS method - focus_soil_moisture data with default moisture contents at pF1, pF 2 and pF 2.5 for USDA soil types from FOCUS GW guidance - Dataset generation scripts in inst/dataset_generation - Depend on R >= 2.15.1 in order to facilitate the use of utils::globalVariables()
2020-11-11	Fix docs and passing of dot arguments for saem	Johannes Ranke	1	-6/+2

2020-11-11	Rename saemix file, option to suppress saemix messages	Johannes Ranke	1	-0/+422