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path: root/R/transform_odeparms.R
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2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke1-2/+3
2014-11-12Merge branch 'master' into ioreJohannes Ranke1-9/+28
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke1-2/+13
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-7/+15
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-12First working fits with IORE modelJohannes Ranke1-1/+13
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke1-6/+0
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke1-38/+89
2014-06-25Remove old ID tag, improve commentJohannes Ranke1-1/+2
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke1-2/+2
- Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN
2014-04-28Fix a bug recently introduced to the Hockey stick modelJohannes Ranke1-3/+3
2014-04-25McCall 2,4,5-T dataset, lower bound for transform_rates=FALSEJohannes Ranke1-2/+2
2014-04-22Possibility to fit without parameter transformationJohannes Ranke1-16/+25
2013-02-17- Added the examples vignette to the kinfit packagejranke1-0/+20
- Added calls to utils::globalVariables to make R CMD check pass cleanly without NOTES git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@62 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-10- Fitting and summaries now work with the new parameter transformations.jranke1-22/+48
- The SFORB models with metabolites is broken (see TODO) - Moved the vignette to the location recommended since R 2.14 - Added the missing documentation - Commented out the schaefer_complex_case test, as this version of mkin is not able to fit a model without sink and therefore mkin estimated parameters are quite different git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@22 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2012-04-03- Separated model prediction out into a separate functionjranke1-0/+46
- Created separate functions for parameter transformations (not documented yet) - Fitting of analytical models works - SFO_SFO model works, complex models do not at the moment - summary.mkinfit not operational at the moment git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@21 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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