Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2014-11-12 | IORE working for parent and metabolites, introduce mkinsub | Johannes Ranke | 3 | -4/+33 | |
2014-11-12 | Merge branch 'master' into iore | Johannes Ranke | 5 | -66/+167 | |
2014-11-12 | Fix a typo in the list of possible arguments | Johannes Ranke | 1 | -1/+1 | |
Thanks to Michael Brauer for the hint | |||||
2014-10-22 | Always include 0 on y axis when plotting during the fit | Johannes Ranke | 1 | -1/+1 | |
2014-10-15 | Switch to using the Port algorithm per default | Johannes Ranke | 1 | -1/+1 | |
2014-10-14 | Further formatting improvement for differential equations | Johannes Ranke | 1 | -1/+1 | |
2014-10-06 | Avoid a warning produced by initial fits in gmkin | Johannes Ranke | 1 | -7/+9 | |
2014-08-29 | Avoid an unnecessary warning | Johannes Ranke | 1 | -1/+1 | |
2014-08-25 | Bug fix and unit tests for mkinerrmin | Johannes Ranke | 1 | -4/+5 | |
See NEWS.md for details | |||||
2014-08-20 | Fix mkinfit for a special situation | Johannes Ranke | 1 | -7/+7 | |
See NEWS.md: When the parent was not the (only) variable with the highest value out of all variables in the observed data, it could happen that the initial value (state.ini) was not initialised. | |||||
2014-08-19 | Improve formatting of differential equations in output | Johannes Ranke | 1 | -1/+1 | |
Rebuild of FOCUS_Z vignette with improved formatting | |||||
2014-07-25 | Fix internal naming of g for transform_fractions=FALSE | Johannes Ranke | 1 | -2/+13 | |
2014-07-24 | Bump version, better default for state.ini | Johannes Ranke | 1 | -2/+8 | |
2014-07-24 | Avoid artificial zero residual in mkinresplot | Johannes Ranke | 1 | -1/+2 | |
2014-07-23 | Parallel metabolite formation with formation fractions in mkinerrmin | Johannes Ranke | 1 | -3/+4 | |
2014-07-21 | Bugfix, model shorthand, state.ini[[1]] from observed data | Johannes Ranke | 2 | -10/+39 | |
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes | |||||
2014-07-17 | Return complete list of initial states after fitting | Johannes Ranke | 1 | -1/+4 | |
This is useful for specifying state.ini in a subsequent call to mkinfit | |||||
2014-07-17 | Handle non-convergence and maximum number of iterations | Johannes Ranke | 1 | -35/+82 | |
For details see NEWS.md | |||||
2014-07-14 | Merge bugfix branch 'master' into iore | Johannes Ranke | 2 | -104/+117 | |
Add IORE support to mkinerrmin | |||||
2014-07-14 | Nearly complete support for IORE, pending mkinerrmin | Johannes Ranke | 5 | -18/+56 | |
2014-07-14 | Bugfix release version 0.9-31 | Johannes Ranke | 2 | -28/+37 | |
2014-07-12 | First working fits with IORE model | Johannes Ranke | 5 | -8/+48 | |
2014-07-07 | Coefficient matrix for formation fractions, no sink and one pathway | Johannes Ranke | 1 | -22/+26 | |
2014-07-02 | Do not introduce formation fractions for singular pathways | Johannes Ranke | 2 | -27/+29 | |
- As a consequence, we do not need implicit formation fractions in mkinfit | |||||
2014-07-02 | Warning -> message, and only if initial parameter was not 1 | Johannes Ranke | 1 | -2/+4 | |
2014-07-02 | Set implicit formation fraction to 1 even if set otherwise in parms.ini | Johannes Ranke | 1 | -6/+8 | |
2014-07-02 | Move handling of implicitly fixed formation fractions to mkinfit | Johannes Ranke | 2 | -19/+11 | |
2014-07-02 | Support formation fractions without sink pathway, updates | Johannes Ranke | 4 | -102/+215 | |
2014-07-01 | One more source code comment | Johannes Ranke | 1 | -0/+2 | |
2014-07-01 | One more check, update source code comment | Johannes Ranke | 1 | -2/+3 | |
2014-06-27 | Reorder endpoints in R/endpoints.R, update vignettes | Johannes Ranke | 1 | -2/+2 | |
2014-06-27 | Reorganize the summary in a more logical order | Johannes Ranke | 1 | -19/+19 | |
2014-06-26 | Avoid calculation of formation fractions if fitted | Johannes Ranke | 1 | -3/+5 | |
2014-06-26 | Fix naming of SFORB DT50_bx values, fix docs | Johannes Ranke | 1 | -2/+2 | |
2014-06-26 | Calculate additional DT50 values for non-SFO models | Johannes Ranke | 1 | -2/+20 | |
2014-06-26 | Add function for geometric mean | Johannes Ranke | 1 | -0/+4 | |
2014-06-26 | Start new version, add xlim to mkinresplot | Johannes Ranke | 1 | -2/+3 | |
2014-06-25 | Remove old ID tag, improve comment | Johannes Ranke | 2 | -4/+3 | |
2014-05-20 | Step back regarding confidence intervals of formation fractions | Johannes Ranke | 2 | -5/+17 | |
- Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN | |||||
2014-05-15 | Start new version number, Fix #5 (Inf values in mkinparplot) | Johannes Ranke | 1 | -1/+2 | |
2014-05-12 | Fix positioning of labels in mkinparplot | Johannes Ranke | 1 | -1/+1 | |
2014-05-09 | Set upper and lower boundx for untransformed fractions | Johannes Ranke | 1 | -3/+16 | |
2014-05-07 | Fork the GUI into package gmkin. See ChangeLog for details | Johannes Ranke | 1 | -11/+0 | |
2014-05-05 | Get old parameters timely (before calling layout) | Johannes Ranke | 1 | -2/+2 | |
2014-05-05 | Fix .Rbuildignore, control font size in mkinparplot | Johannes Ranke | 1 | -1/+2 | |
2014-05-02 | Improve labelling in mkinparplot | Johannes Ranke | 1 | -5/+9 | |
2014-05-02 | Improve display of confidence intervals | Johannes Ranke | 1 | -4/+8 | |
2014-05-02 | Add missing files for plotting confindence intervals | Johannes Ranke | 1 | -0/+53 | |
2014-04-30 | Fix of bug introduced with t-test | Johannes Ranke | 1 | -1/+1 | |
2014-04-30 | Restore t-test (1- and 2-sided) for fitted parameters | Johannes Ranke | 1 | -3/+6 | |