aboutsummaryrefslogtreecommitdiff
path: root/R
AgeCommit message (Expand)AuthorFilesLines
2015-06-20Low-level generation of compiled modelsJohannes Ranke7-62/+104
2015-05-15Make mkinmod quiet in testsJohannes Ranke1-4/+4
2015-04-18Add a vignette showing the performance of compiled modelsJohannes Ranke1-3/+6
2015-04-17Make compiled FOMC and DFOP models workJohannes Ranke1-5/+4
2015-04-16Order of parameters needs to be right for compiled modelsJohannes Ranke1-1/+1
2015-04-16Update copyright header, improve documentation of solution_typeJohannes Ranke3-14/+19
2015-04-16Check compiled mkinmod versions in examples and testsJohannes Ranke2-1/+5
2015-04-14Compile differential equation models with ccSolve packageJohannes Ranke2-9/+47
2015-02-21Avoid NOTES in R CMD checkJohannes Ranke1-1/+1
2015-02-20Add termination message to mkinfit, prepare releaseJohannes Ranke1-1/+9
2015-02-20Fix printing the summary if iterations are not availableJohannes Ranke1-1/+4
2014-11-23Simply get rid of the warnings when drawing arrowsJohannes Ranke1-8/+7
2014-11-23Avoid spurious warning in mkinparplot, bump versionJohannes Ranke1-4/+10
2014-11-12Fix for IORE in mkinmodJohannes Ranke1-4/+4
2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke3-4/+33
2014-11-12Merge branch 'master' into ioreJohannes Ranke5-66/+167
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke1-1/+1
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-1/+1
2014-10-14Further formatting improvement for differential equationsJohannes Ranke1-1/+1
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke1-7/+9
2014-08-29Avoid an unnecessary warningJohannes Ranke1-1/+1
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke1-4/+5
2014-08-20Fix mkinfit for a special situationJohannes Ranke1-7/+7
2014-08-19Improve formatting of differential equations in outputJohannes Ranke1-1/+1
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke1-2/+13
2014-07-24Bump version, better default for state.iniJohannes Ranke1-2/+8
2014-07-24Avoid artificial zero residual in mkinresplotJohannes Ranke1-1/+2
2014-07-23Parallel metabolite formation with formation fractions in mkinerrminJohannes Ranke1-3/+4
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke2-10/+39
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-35/+82
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke2-104/+117
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke5-18/+56
2014-07-14Bugfix release version 0.9-31Johannes Ranke2-28/+37
2014-07-12First working fits with IORE modelJohannes Ranke5-8/+48
2014-07-07Coefficient matrix for formation fractions, no sink and one pathwayJohannes Ranke1-22/+26
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke2-27/+29
2014-07-02Warning -> message, and only if initial parameter was not 1Johannes Ranke1-2/+4
2014-07-02Set implicit formation fraction to 1 even if set otherwise in parms.iniJohannes Ranke1-6/+8
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke2-19/+11
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke4-102/+215
2014-07-01One more source code commentJohannes Ranke1-0/+2
2014-07-01One more check, update source code commentJohannes Ranke1-2/+3
2014-06-27Reorder endpoints in R/endpoints.R, update vignettesJohannes Ranke1-2/+2
2014-06-27Reorganize the summary in a more logical orderJohannes Ranke1-19/+19
2014-06-26Avoid calculation of formation fractions if fittedJohannes Ranke1-3/+5
2014-06-26Fix naming of SFORB DT50_bx values, fix docsJohannes Ranke1-2/+2
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-2/+20
2014-06-26Add function for geometric meanJohannes Ranke1-0/+4

Contact - Imprint