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Fitting kinetic models to chemical degradation data (also on github)
Johannes Ranke
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2020-05-11
Avoid merge() and data.frame() in cost function
Johannes Ranke
5
-28
/
+32
2020-05-10
Default to analytical for coupled models if available
Johannes Ranke
2
-3
/
+4
2020-05-09
Avoid the call to merge for analytical solutions
Johannes Ranke
6
-72
/
+83
2020-05-09
Make mkinpredict consistently return a dataframe
Johannes Ranke
1
-16
/
+16
2020-05-08
Profiling suggests the merge in mkinfit is the bottleneck
Johannes Ranke
1
-0
/
+3
2020-05-08
We do not need the n.outtimes argument for mkinfit
Johannes Ranke
1
-10
/
+3
2020-05-08
Avoid duplicate merge in tc error model fit
Johannes Ranke
1
-10
/
+7
2020-05-08
Slight performance gain by reducing default n.outtimes
Johannes Ranke
1
-2
/
+2
2020-05-08
Analytical SFO_SFO about as fast as deSolve compiled
Johannes Ranke
2
-19
/
+52
2020-05-07
Another overhaul of analytical solutions
Johannes Ranke
7
-116
/
+74
2020-05-07
Merge parent solutions to one file
Johannes Ranke
2
-2
/
+9
2020-05-07
Static documentation rebuilt by pkgdown
Johannes Ranke
7
-186
/
+231
2020-05-06
Change implementation of analytical solutions
Johannes Ranke
3
-94
/
+104
2020-05-06
Formatting, README update, color palette of R 4.x
Johannes Ranke
1
-32
/
+32
2020-05-06
Remove redundant comments
Johannes Ranke
1
-7
/
+0
2020-04-22
Support SFORB with formation fractions
Johannes Ranke
2
-33
/
+22
2020-04-22
Remove GPL header from test files
Johannes Ranke
1
-3
/
+3
2020-04-18
Fix NOTE, prepare for release
v0.9.49.10
Johannes Ranke
1
-1
/
+1
2020-04-18
Avoid assignment to .GlobalEnv for CRAN
Johannes Ranke
2
-15
/
+32
2020-04-17
Fix summarizing old objects
Johannes Ranke
1
-6
/
+12
2020-04-17
Add AIC, BIC and log likelihood to summary.mkinfit
Johannes Ranke
1
-0
/
+7
2020-04-16
mean_degparms: Fix rownames in random effects
Johannes Ranke
1
-1
/
+1
2020-04-15
Adapt endpoint() to also work for nlme.mmkin objects
Johannes Ranke
2
-8
/
+36
2020-04-15
Include random effects in starting parameters
Johannes Ranke
3
-79
/
+131
2020-04-15
Show fit information even if show_errmin = FALSE
Johannes Ranke
1
-4
/
+5
2020-04-15
A plot method for nlme.mmkin fits
Johannes Ranke
2
-4
/
+108
2020-04-14
Add a nlme method for mmkin row objects
Johannes Ranke
2
-10
/
+92
2020-04-14
Keep order of datasets in nlme_data, add a plot
Johannes Ranke
1
-2
/
+9
2020-04-10
Improve nlme function docs
Johannes Ranke
1
-34
/
+33
2020-04-07
Improve documentation of mmkin objects
Johannes Ranke
1
-2
/
+3
2020-04-04
Add three functions to facilitate the use of nlme
Johannes Ranke
3
-175
/
+219
2020-04-03
Merge branch 'master' into mxkin
Johannes Ranke
4
-95
/
+105
2020-04-03
Compiled models article, reduce distractions
Johannes Ranke
2
-10
/
+16
2020-03-31
Use inline documentation for R6 class mkinds
Johannes Ranke
1
-24
/
+29
2020-03-31
Static documentation rebuilt by pkgdown
Johannes Ranke
1
-2
/
+4
2020-03-30
Don't check for gcc on the path in mkinmod
Johannes Ranke
1
-60
/
+57
2020-03-30
Fixed example code
Johannes Ranke
1
-3
/
+2
2020-03-30
First nlme fits for models with a metabolite
Johannes Ranke
1
-40
/
+78
2020-03-29
First automatic generation of an nlme model
Johannes Ranke
2
-58
/
+133
2020-03-27
Merge branch 'master' into mxkin
Johannes Ranke
7
-29
/
+214
2020-03-18
Clarify comment in example code
Johannes Ranke
1
-1
/
+1
2020-02-14
Delete trailing whitespace
Johannes Ranke
1
-11
/
+11
2019-12-16
Argument ymax for plot.mmkin
Johannes Ranke
1
-10
/
+16
2019-12-09
Consistently use "two-component error model"
Johannes Ranke
1
-1
/
+1
2019-11-13
Improve formatting using markdown
Johannes Ranke
1
-9
/
+7
2019-11-13
Calculate Akaike weights
Johannes Ranke
1
-0
/
+60
2019-11-13
Likelihood ratio test for mmkin columns with two fits
Johannes Ranke
1
-3
/
+2
2019-11-12
lrtest method for mmkin columns with two fits
Johannes Ranke
1
-0
/
+9
2019-11-09
Add a lack-of-fit test
Johannes Ranke
2
-5
/
+118
2019-11-06
Attempt of an overall model for an mmkin row
Johannes Ranke
1
-0
/
+58
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