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2014-11-12Merge branch 'master' into ioreJohannes Ranke5-66/+167
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke1-1/+1
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-1/+1
2014-10-14Further formatting improvement for differential equationsJohannes Ranke1-1/+1
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke1-7/+9
2014-08-29Avoid an unnecessary warningJohannes Ranke1-1/+1
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke1-4/+5
2014-08-20Fix mkinfit for a special situationJohannes Ranke1-7/+7
2014-08-19Improve formatting of differential equations in outputJohannes Ranke1-1/+1
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke1-2/+13
2014-07-24Bump version, better default for state.iniJohannes Ranke1-2/+8
2014-07-24Avoid artificial zero residual in mkinresplotJohannes Ranke1-1/+2
2014-07-23Parallel metabolite formation with formation fractions in mkinerrminJohannes Ranke1-3/+4
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke2-10/+39
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-35/+82
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke2-104/+117
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke5-18/+56
2014-07-14Bugfix release version 0.9-31Johannes Ranke2-28/+37
2014-07-12First working fits with IORE modelJohannes Ranke5-8/+48
2014-07-07Coefficient matrix for formation fractions, no sink and one pathwayJohannes Ranke1-22/+26
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke2-27/+29
2014-07-02Warning -> message, and only if initial parameter was not 1Johannes Ranke1-2/+4
2014-07-02Set implicit formation fraction to 1 even if set otherwise in parms.iniJohannes Ranke1-6/+8
2014-07-02Move handling of implicitly fixed formation fractions to mkinfitJohannes Ranke2-19/+11
2014-07-02Support formation fractions without sink pathway, updatesJohannes Ranke4-102/+215
2014-07-01One more source code commentJohannes Ranke1-0/+2
2014-07-01One more check, update source code commentJohannes Ranke1-2/+3
2014-06-27Reorder endpoints in R/endpoints.R, update vignettesJohannes Ranke1-2/+2
2014-06-27Reorganize the summary in a more logical orderJohannes Ranke1-19/+19
2014-06-26Avoid calculation of formation fractions if fittedJohannes Ranke1-3/+5
2014-06-26Fix naming of SFORB DT50_bx values, fix docsJohannes Ranke1-2/+2
2014-06-26Calculate additional DT50 values for non-SFO modelsJohannes Ranke1-2/+20
2014-06-26Add function for geometric meanJohannes Ranke1-0/+4
2014-06-26Start new version, add xlim to mkinresplotJohannes Ranke1-2/+3
2014-06-25Remove old ID tag, improve commentJohannes Ranke2-4/+3
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke2-5/+17
2014-05-15Start new version number, Fix #5 (Inf values in mkinparplot)Johannes Ranke1-1/+2
2014-05-12Fix positioning of labels in mkinparplotJohannes Ranke1-1/+1
2014-05-09Set upper and lower boundx for untransformed fractionsJohannes Ranke1-3/+16
2014-05-07Fork the GUI into package gmkin. See ChangeLog for detailsJohannes Ranke1-11/+0
2014-05-05Get old parameters timely (before calling layout)Johannes Ranke1-2/+2
2014-05-05Fix .Rbuildignore, control font size in mkinparplotJohannes Ranke1-1/+2
2014-05-02Improve labelling in mkinparplotJohannes Ranke1-5/+9
2014-05-02Improve display of confidence intervalsJohannes Ranke1-4/+8
2014-05-02Add missing files for plotting confindence intervalsJohannes Ranke1-0/+53
2014-04-30Fix of bug introduced with t-testJohannes Ranke1-1/+1
2014-04-30Restore t-test (1- and 2-sided) for fitted parametersJohannes Ranke1-3/+6
2014-04-29Restore graphics parameters after plotting with residualsJohannes Ranke1-0/+2

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