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Fitting kinetic models to chemical degradation data (also on github)
Johannes Ranke
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2013-10-30
- Backtransform fixed ODE parameters for the summary (compare ChangeLog)
jranke
1
-2
/
+2
2013-10-29
- Just one little formatting change in mkinfit.R
jranke
1
-1
/
+2
2013-10-21
- Simplified implementation of mkinerrmin (see ChangeLog)
jranke
1
-6
/
+9
2013-10-17
- Fix reweighting for the case of many metabolites
jranke
1
-1
/
+1
2013-10-17
- See ChangeLog entry for today (2 small bugfixes and lots of GUI progress)
jranke
1
-1
/
+1
2013-10-16
- More consistent output regarding optimised and fixed parameters (see Change...
jranke
1
-4
/
+9
2013-10-10
- IRLS is implemented
jranke
2
-16
/
+60
2013-10-10
- Added a ChangeLog
jranke
2
-16
/
+34
2013-10-08
- Added the possibility to specify the observed variable in mkinmod in a chec...
jranke
1
-3
/
+4
2013-06-18
Pending check-in of stuff started at east one month ago:
jranke
2
-2
/
+5
2013-04-14
- Update the TODO list, setting some requirements for version 1.0
jranke
3
-2
/
+27
2013-03-15
Add the solution type used in the fit to the summary
jranke
1
-0
/
+4
2013-03-12
Improve formatting of data in print.summary.mkinfit()
jranke
1
-1
/
+1
2013-03-05
- Calculate confidence intervals for parameters based on the t distribution
jranke
1
-22
/
+37
2013-03-04
Introduce the possibility to place the legend with mkin using arguments lpos ...
jranke
1
-2
/
+3
2013-02-21
Make the use of globalVariable() conditional on R Version >= 2.15.1,
jranke
5
-5
/
+8
2013-02-18
- Completion of the multicompartment part of the mkin examples vignette
jranke
4
-14
/
+17
2013-02-18
- Some more work on the vignette
jranke
1
-2
/
+1
2013-02-18
More work on the examples vignette
jranke
1
-8
/
+16
2013-02-18
- Fix the line types in plot.mkinfit again.
jranke
1
-1
/
+2
2013-02-17
- Added the examples vignette to the kinfit package
jranke
6
-5
/
+50
2013-02-16
- Some maintenance fixes
jranke
3
-4
/
+4
2013-02-05
- Prevent wrong association of colors and linetypes in plots during mkinfit o...
jranke
1
-6
/
+7
2012-12-13
Small formatting improvements
jranke
1
-5
/
+8
2012-11-26
- Added an S3 plot method for mkinfit models
jranke
3
-37
/
+48
2012-07-03
- Add rtol argument in order to increase the precision of deSolve based
jranke
3
-5
/
+7
2012-06-28
- Formatting improvement of mkinmod
jranke
2
-18
/
+19
2012-06-25
- Document endpoints() function
jranke
1
-12
/
+16
2012-06-18
Put the calculation of dissipation times, formation fractions and SFORB eigen...
jranke
3
-94
/
+100
2012-05-16
Fixed a bug in mkinmod that produced a erroneous coefficient matrix if more t...
jranke
1
-4
/
+7
2012-05-07
- Moved the call to mkinerrmin to summary.mkinfit
jranke
2
-46
/
+71
2012-04-25
- Some more unit tests
jranke
2
-80
/
+17
2012-04-25
- Transferred some testing code from test.R to unit tests for mkinpredict
jranke
1
-4
/
+4
2012-04-24
- Added the reference fit data for FOCUS 2006 datasets from the kinfit package
jranke
2
-6
/
+49
2012-04-23
- Fixed a couple of things
jranke
4
-3
/
+20
2012-04-23
- Some fixes to mkinfit, to account for the changes in mkinmod
jranke
1
-18
/
+25
2012-04-16
- Start of an adaptation of mkinfit, but it seems nothing is really needed
jranke
1
-0
/
+6
2012-04-16
Overhaul of mkinmod in order to make it possible to choose between different ...
jranke
1
-52
/
+108
2012-04-15
- Fixed the SFORB coefficient matrix, at least for the case where parent is S...
jranke
1
-2
/
+9
2012-04-11
- Testing of the new fitting process with transformed parameters shows that i...
jranke
1
-40
/
+37
2012-04-11
Added subversion keyword substitution to R source files in order to get corre...
jranke
7
-7
/
+7
2012-04-10
- Fitting and summaries now work with the new parameter transformations.
jranke
3
-65
/
+81
2012-04-03
- Separated model prediction out into a separate function
jranke
3
-184
/
+180
2012-03-27
Start of the transition to fitting transformed parameters.
jranke
4
-173
/
+158
2012-03-15
Update kinfit and mkin to the latest version published on BerliOS.
jranke
13
-109
/
+694
2010-05-31
- Added a test based on the KinGUI paper "complex case"
jranke
1
-3
/
+3
2010-05-20
Various improvements, the most prominent being the addition of the
jranke
2
-13
/
+25
2010-05-18
Much more complete version that was just submitted to CRAN.
jranke
6
-35
/
+356
2010-05-11
Initial upload of the upcoming multicompartment version of kinfit.
jranke
2
-0
/
+142
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