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2015-10-19Add a print method for mkinmod objectsJohannes Ranke1-0/+16
2015-10-16Full compound names in models that are shown in the plotJohannes Ranke2-5/+9
2015-07-20Avoid error message for SFORB in endpoints, updatesJohannes Ranke1-7/+14
2015-06-30Improve calculation of DT90 in endpoints(), check and testJohannes Ranke1-16/+22
2015-06-30Start to import or qualify functions from stats, utils et al.Johannes Ranke2-3/+3
2015-06-26Fix x axis scaling in mkinparplotJohannes Ranke1-1/+1
2015-06-26Subsetting and plotting for mmkin objectsJohannes Ranke2-0/+107
2015-06-25Fix fitting with parLapply, doc fixJohannes Ranke1-1/+1
2015-06-25Add mmkin for testingJohannes Ranke1-0/+46
2015-06-23Hopefully fix compiling on Solaris, verbose optionJohannes Ranke1-11/+23
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-18/+71
2015-06-20Suppress compiler warning for sometimes unused time variableJohannes Ranke1-1/+3
2015-06-20Low-level generation of compiled modelsJohannes Ranke7-62/+104
2015-05-15Make mkinmod quiet in testsJohannes Ranke1-4/+4
2015-04-18Add a vignette showing the performance of compiled modelsJohannes Ranke1-3/+6
2015-04-17Make compiled FOMC and DFOP models workJohannes Ranke1-5/+4
2015-04-16Order of parameters needs to be right for compiled modelsJohannes Ranke1-1/+1
2015-04-16Update copyright header, improve documentation of solution_typeJohannes Ranke3-14/+19
2015-04-16Check compiled mkinmod versions in examples and testsJohannes Ranke2-1/+5
2015-04-14Compile differential equation models with ccSolve packageJohannes Ranke2-9/+47
2015-02-21Avoid NOTES in R CMD checkJohannes Ranke1-1/+1
2015-02-20Add termination message to mkinfit, prepare releaseJohannes Ranke1-1/+9
2015-02-20Fix printing the summary if iterations are not availableJohannes Ranke1-1/+4
2014-11-23Simply get rid of the warnings when drawing arrowsJohannes Ranke1-8/+7
2014-11-23Avoid spurious warning in mkinparplot, bump versionJohannes Ranke1-4/+10
2014-11-12Fix for IORE in mkinmodJohannes Ranke1-4/+4
2014-11-12IORE working for parent and metabolites, introduce mkinsubJohannes Ranke3-4/+33
2014-11-12Merge branch 'master' into ioreJohannes Ranke5-66/+167
2014-11-12Fix a typo in the list of possible argumentsJohannes Ranke1-1/+1
2014-10-22Always include 0 on y axis when plotting during the fitJohannes Ranke1-1/+1
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-1/+1
2014-10-14Further formatting improvement for differential equationsJohannes Ranke1-1/+1
2014-10-06Avoid a warning produced by initial fits in gmkinJohannes Ranke1-7/+9
2014-08-29Avoid an unnecessary warningJohannes Ranke1-1/+1
2014-08-25Bug fix and unit tests for mkinerrminJohannes Ranke1-4/+5
2014-08-20Fix mkinfit for a special situationJohannes Ranke1-7/+7
2014-08-19Improve formatting of differential equations in outputJohannes Ranke1-1/+1
2014-07-25Fix internal naming of g for transform_fractions=FALSEJohannes Ranke1-2/+13
2014-07-24Bump version, better default for state.iniJohannes Ranke1-2/+8
2014-07-24Avoid artificial zero residual in mkinresplotJohannes Ranke1-1/+2
2014-07-23Parallel metabolite formation with formation fractions in mkinerrminJohannes Ranke1-3/+4
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke2-10/+39
2014-07-17Return complete list of initial states after fittingJohannes Ranke1-1/+4
2014-07-17Handle non-convergence and maximum number of iterationsJohannes Ranke1-35/+82
2014-07-14Merge bugfix branch 'master' into ioreJohannes Ranke2-104/+117
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke5-18/+56
2014-07-14Bugfix release version 0.9-31Johannes Ranke2-28/+37
2014-07-12First working fits with IORE modelJohannes Ranke5-8/+48
2014-07-07Coefficient matrix for formation fractions, no sink and one pathwayJohannes Ranke1-22/+26
2014-07-02Do not introduce formation fractions for singular pathwaysJohannes Ranke2-27/+29

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