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2020-05-27Advertise docs of the dev versionJohannes Ranke1-4/+4
2020-05-27Create up to date pkgdown docs in development modeJohannes Ranke1-1/+1
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-2/+2
2020-05-06Formatting, README update, color palette of R 4.xJohannes Ranke1-1/+1
2020-04-17Advertise nlme related functionalityJohannes Ranke1-0/+3
2019-12-10More additions to the READMEJohannes Ranke1-3/+7
2019-12-10Update and amend the READMEJohannes Ranke1-3/+21
2019-11-13Improve READMEJohannes Ranke1-12/+5
2019-11-01Update link, increase tolerance of a test for Travisv0.9.49.7Johannes Ranke1-1/+1
2019-07-09Adaptations for gmkinJohannes Ranke1-1/+1
Address winbuilder check problems, update check log, update of static docs
2019-07-04Update README and introductory vignetteJohannes Ranke1-10/+10
2019-02-21Use codecovJohannes Ranke1-0/+1
2018-09-15Ignore .travis.yml, add build statusJohannes Ranke1-0/+1
2018-09-13Enable new error model in gmkinJohannes Ranke1-1/+1
Also improve the irls fitting of the error model and add a test for FOCUS_2006_C where the second component of the error model is zero
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-3/+3
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-03-02Use pkgdown.jrwb.de as canonical doc URLJohannes Ranke1-11/+11
The mkin pkgdown docs have made it to the pkgdown README :) https://github.com/r-lib/pkgdown/commit/f0ef0b58a526add2077e5899f45335a5118091f0
2018-01-30Add a note to the README about the new methodJohannes Ranke1-0/+4
2018-01-30Reweighting with two-component error modelJohannes Ranke1-1/+1
Static documentation except articles rebuilt by pkgdown
2017-11-10Delete trailing whitespace, update README.htmlJohannes Ranke1-28/+28
2017-09-06Adapt the IRLS instructions to current versionJohannes Ranke1-1/+1
2017-07-21Fix URLsJohannes Ranke1-1/+1
2017-03-15Use https for CRAN badgeJohannes Ranke1-2/+2
2017-03-04Mention pkgdown.jrwb.de/mkin in READMEJohannes Ranke1-1/+3
Add very small twa vignette, update pkgdown docs
2016-12-08Documentation and Makefile improvementsJohannes Ranke1-3/+3
- Fix the remaining links to static docs on r-forge in README - Build mkin_*.tar.gz packages in current directory - check and test (test.log unchanged)
2016-11-18Fix links in README, configure navbar, rebuild docsJohannes Ranke1-8/+8
2016-11-17Canonicalize remaining CRAN URLsJohannes Ranke1-5/+5
2016-11-17Also use https for badge, to avoid mixed contentJohannes Ranke1-1/+1
2016-11-17Satisfy CRAN checks, also on R-develJohannes Ranke1-4/+4
- Use https for canonical R URLs - Update CAKE URL to one giving a valid SSL certificate
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-2/+2
Using pkgdown with PR hadley/pkgdown#212
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-1/+1
2016-03-24Address feedback from CRAN submissionJohannes Ranke1-1/+1
- Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work
2016-03-23Added 'from_max_mean' to 'mkinfit'.Johannes Ranke1-1/+1
- Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel
2015-12-09Some updates and simplifications of the READMEJohannes Ranke1-24/+5
2015-08-22Commit README.md containing the source of the last commitJohannes Ranke1-0/+5
2015-08-22Add a link to the cgit repo browser at jrwb.deJohannes Ranke1-0/+1
2015-07-22Mention the 2014 update of the FOCUS guidanceJohannes Ranke1-1/+2
2015-07-21Fix link to the NEWS fileJohannes Ranke1-1/+1
2015-07-17Add badge, as seen in the gaborcsardi/pkgconfig repoJohannes Ranke1-0/+2
2015-06-29Fix link to plot.mmkinJohannes Ranke1-1/+1
2015-06-29Do not include plots and R output in READMEJohannes Ranke1-77/+18
This does not get rendered properly on CRAN, and is easily replaced by links to the static documentation on R-Forge.
2015-06-26Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-39Johannes Ranke1-1/+2
r-forge
2015-06-26New links to NEWS files.Johannes Ranke1-1/+1
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-0/+2
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-4/+6
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-05-19Avoid distracting output in READMEJohannes Ranke1-144/+1
2015-05-19Include output in README, use mkinsub() in example codeJohannes Ranke1-8/+174
2015-05-19Code highlighting, use of mkinsub() in README.mdJohannes Ranke1-24/+30
2015-05-19Make compiled models more prominent in feature listJohannes Ranke1-3/+4
2015-05-19Link to compiled_models vignette, advertise NEWSJohannes Ranke1-1/+9
2015-05-15Remove dead link to KinGUII pagev0.9-35Johannes Ranke1-6/+5

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