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2015-07-22Mention the 2014 update of the FOCUS guidanceJohannes Ranke1-1/+2
2015-07-21Fix link to the NEWS fileJohannes Ranke1-1/+1
2015-07-17Add badge, as seen in the gaborcsardi/pkgconfig repoJohannes Ranke1-0/+2
2015-06-29Fix link to plot.mmkinJohannes Ranke1-1/+1
2015-06-29Do not include plots and R output in READMEJohannes Ranke1-77/+18
This does not get rendered properly on CRAN, and is easily replaced by links to the static documentation on R-Forge.
2015-06-26Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵v0.9-39Johannes Ranke1-1/+2
r-forge
2015-06-26New links to NEWS files.Johannes Ranke1-1/+1
2015-06-21Do the t-test for untransformed parametersv0.9-36Johannes Ranke1-0/+2
2015-06-20Low-level generation of compiled modelsJohannes Ranke1-4/+6
As it is unclear if and when ccSolve will be published on CRAN, the generation, compilation and use of the C version of the system of differential equations was developed for mkin, inspired and guided by the code from the ccSolve package. Many thanks again to Karline Soetaert for all of her work on this and other R packages. Now all model types, including the Hockey-Stick model for the parent compund and the IORE model for parent and/or metabolites can be compiled.
2015-05-19Avoid distracting output in READMEJohannes Ranke1-144/+1
2015-05-19Include output in README, use mkinsub() in example codeJohannes Ranke1-8/+174
2015-05-19Code highlighting, use of mkinsub() in README.mdJohannes Ranke1-24/+30
2015-05-19Make compiled models more prominent in feature listJohannes Ranke1-3/+4
2015-05-19Link to compiled_models vignette, advertise NEWSJohannes Ranke1-1/+9
2015-05-15Remove dead link to KinGUII pagev0.9-35Johannes Ranke1-6/+5
2014-11-20Add the year of the first distributed KinGUII versionJohannes Ranke1-3/+3
2014-11-12Merge branch 'master' into ioreJohannes Ranke1-22/+26
2014-10-23Update to READMEJohannes Ranke1-2/+2
2014-10-15Switch to using the Port algorithm per defaultJohannes Ranke1-2/+1
2014-10-14Some cosmeticsJohannes Ranke1-4/+4
2014-10-14Link the the new gmkin homepageJohannes Ranke1-4/+3
2014-08-30Change to https to avoid messages about leaving secured groundsJohannes Ranke1-1/+1
2014-08-30Correct the link to KinGUIIJohannes Ranke1-1/+1
2014-08-30Add a link to the KinGUII websiteJohannes Ranke1-1/+2
2014-07-21Residual plots are importantJohannes Ranke1-0/+1
2014-07-21Simplify usage examplesJohannes Ranke1-17/+16
2014-07-21Bugfix, model shorthand, state.ini[[1]] from observed dataJohannes Ranke1-0/+5
- The bug occurred when using transform_rates=FALSE for FOMC, DFOP or HS - Make it possible to use mkinfit("SFO", ...) - Take initial mean value at time zero for the variable with the highest value in the observed data - Update of vignette/FOCUS_L - Improve the Makefile to build single vignettes
2014-07-16Merge branch 'master' into ioreJohannes Ranke1-2/+3
2014-07-14Small improvements to usage examplesJohannes Ranke1-2/+3
2014-07-14Nearly complete support for IORE, pending mkinerrminJohannes Ranke1-0/+3
2014-07-03Add a more complex usage exampleJohannes Ranke1-1/+17
2014-07-02Internal parameter transformations are optionalJohannes Ranke1-2/+2
2014-06-11Small updatesJohannes Ranke1-1/+1
2014-05-20Step back regarding confidence intervals of formation fractionsJohannes Ranke1-1/+1
- Don't give confidence intervals for formation fractions that belong to a set, only for single formation fractions - Update the vignette with history and background - Correct 'isotropic' into 'isometric' in the ilr documentation, the README and the comments in transform_odeparms - Candidate for release to CRAN
2014-05-08Better wordingJohannes Ranke1-2/+1
2014-05-08README update, fix the vignette title for FOCUS ZJohannes Ranke1-20/+20
2014-05-08Some cosmetics on the READMEJohannes Ranke1-2/+4
2014-05-07Fork the GUI into package gmkin. See ChangeLog for detailsJohannes Ranke1-33/+3
2014-05-05Mention Chrome on Windows in the README, tooJohannes Ranke1-1/+5
2014-05-05Update of READMEJohannes Ranke1-5/+11
2014-05-03Fix of grammatical errorJohannes Ranke1-1/+1
2014-05-02Further improved READMEJohannes Ranke1-2/+1
2014-05-02Improve READMEJohannes Ranke1-2/+9
2014-05-02Next try at showing the screenshot, ignore in buildJohannes Ranke1-1/+1
2014-05-02Added a screenshot hopefully visible from README.mdJohannes Ranke1-0/+20
2014-03-21Fix markup of mkin acronym explanation (hopefully)Johannes Ranke1-4/+4
2013-11-17Change vignette format to knitr (see ChangeLog)Johannes Ranke1-5/+37
2013-11-13Update of README using TortoiseGitJohannes Ranke1-5/+4
2013-11-12Added Contributions section to READMEJohannes Ranke1-0/+7
2013-11-12More history in the READMEJohannes Ranke1-12/+22

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