| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2019-10-22 | Go back to d_3 for errmod = "obs" | Johannes Ranke | 1 | -26/+2 | |
| in the hope that this makes plotting cross-platform also for this error model | |||||
| 2019-10-21 | Local check | Johannes Ranke | 1 | -6/+23 | |
| 2019-10-21 | Improve some plotting routines, more tests | Johannes Ranke | 1 | -5/+3 | |
| Static documentation rebuilt by pkgdown | |||||
| 2019-10-21 | Refactor mkinfit, infrastructure work | Johannes Ranke | 1 | -23/+8 | |
| mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7. | |||||
| 2019-07-09 | Address winbuilder R-devel warning about usage | Johannes Ranke | 1 | -3/+27 | |
| 2019-07-09 | Adaptations for gmkin | Johannes Ranke | 1 | -1/+1 | |
| Address winbuilder check problems, update check log, update of static docs | |||||
| 2019-07-03 | Add check and test logs | Johannes Ranke | 1 | -10/+2 | |
| 2019-06-04 | Additional algorithm "d_c", more tests, docs | Johannes Ranke | 1 | -3/+11 | |
| The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets. | |||||
| 2019-05-03 | Improve error model fitting | Johannes Ranke | 1 | -0/+1 | |
| Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown | |||||
| 2019-05-02 | Improve tests | Johannes Ranke | 1 | -3/+3 | |
| - Improve control of the number of cores - Reduce the precision of the correlation matrix in the test summary output, as the exact results are platform dependent | |||||
| 2019-03-04 | Review tests and examples based on winbuilder results | Johannes Ranke | 1 | -13/+3 | |
| Static documentation rebuilt by pkgdown | |||||
| 2019-02-26 | NAFTA SOP Attachment vignette | Johannes Ranke | 1 | -5/+15 | |
| Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0 | |||||
| 2018-09-21 | Improve fitting the two-component error model | Johannes Ranke | 1 | -1/+1 | |
| with respect to accuracy and robustness. | |||||
| 2018-09-14 | Update NEWS | Johannes Ranke | 1 | -1/+1 | |
| Static documentation rebuilt by pkgdown | |||||
| 2018-09-14 | Remove two vignettes from the package but not from docs | Johannes Ranke | 1 | -4/+2 | |
| - Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate | |||||
| 2018-09-13 | Enable new error model in gmkin | Johannes Ranke | 1 | -2/+3 | |
| Also improve the irls fitting of the error model and add a test for FOCUS_2006_C where the second component of the error model is zero | |||||
| 2018-07-19 | Check log for version just submitted to CRANv0.9.47.2 | Johannes Ranke | 1 | -28/+3 | |
| 2018-07-18 | Correct references to the Rocke and Lorenzato model | Johannes Ranke | 1 | -5/+10 | |
| Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation. | |||||
| 2018-02-06 | Skip some tests on CRAN, more quiet examplesv0.9.47.1 | Johannes Ranke | 1 | -2/+23 | |
| 2018-01-30 | Reweighting with two-component error model | Johannes Ranke | 1 | -9/+3 | |
| Static documentation except articles rebuilt by pkgdown | |||||
| 2018-01-07 | Don't run water sediment example to reduce time needed | Johannes Ranke | 1 | -10/+8 | |
| Static documentation except articles rebuilt by pkgdown | |||||
| 2017-09-07 | Static documentation except articles rebuilt by pkgdown | Johannes Ranke | 1 | -3/+11 | |
| 2017-07-31 | Check log for the release | Johannes Ranke | 1 | -2/+2 | |
| 2017-07-29 | Bump version, update NEWS and rebuild pkdown docsv0.9.46 | Johannes Ranke | 1 | -1/+1 | |
| 2017-07-21 | Now the check passes on Linux | Johannes Ranke | 1 | -1/+1 | |
| 2017-07-21 | Improve devtools::test() call, update logs | Johannes Ranke | 1 | -19/+4 | |
| 2017-07-21 | Rename twa to max_twa_parent, update docs | Johannes Ranke | 1 | -5/+10 | |
| 2017-05-05 | Static docs except articles rebuilt with current pkgdown | Johannes Ranke | 1 | -10/+20 | |
| 2016-12-08 | Documentation and Makefile improvements | Johannes Ranke | 1 | -8/+2 | |
| - Fix the remaining links to static docs on r-forge in README - Build mkin_*.tar.gz packages in current directory - check and test (test.log unchanged) | |||||
| 2015-07-21 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -2/+3 | |
| r-forge | |||||
| 2015-07-20 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 1 | -4/+8 | |
| r-forge | |||||
| 2015-07-20 | Avoid error message for SFORB in endpoints, updates | Johannes Ranke | 1 | -17/+3 | |
| 2015-06-30 | Improve calculation of DT90 in endpoints(), check and test | Johannes Ranke | 1 | -4/+6 | |
| 2015-06-29 | Build and check | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-26 | Pass R CMD check --as-cran, vignette rebuild | Johannes Ranke | 1 | -1/+1 | |
| 2015-06-23 | Version bump, keep logs of build, check and test | Johannes Ranke | 1 | -0/+81 | |
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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