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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke2-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-03-02Make tests more platform independent, update docsJohannes Ranke2-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke3-0/+12
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke3-0/+27
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-0/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke2-0/+0
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke2-0/+0
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-0/+0
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-0/+0
2019-07-09Adaptations for gmkinJohannes Ranke2-0/+0
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke2-0/+0
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke2-0/+0
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-0/+0
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-0/+0
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-0/+0
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-0/+0
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke2-0/+0
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2018-03-09Another rebuild of the static docsJohannes Ranke2-0/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke2-0/+0
2017-11-16Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3Johannes Ranke2-0/+0
Static documentation articles rebuilt by pkgdown::build_articles()
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke2-0/+0
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke2-0/+0
Again with the jranke branch of jranke/pkgdown
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke2-0/+0
Using branch 'jranke' on jranke/pkgdown, fixing issues hadley/pgkdown#178 and hadley/pkgdown#213 Remove plot=TRUE from mkinfit calls also in dontrun sections of examples to avoid a flood png files documenting the progress of the fit.
2016-11-17Static documentation rebuilt by pkgdown::build_site()Johannes Ranke2-0/+0
2016-11-04Rebuild docs with updated PR for pkgdownJohannes Ranke2-0/+0
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke2-0/+0
Using pkgdown with PR hadley/pkgdown#212
2016-10-26Static documentation rebuilt by pkgdown::build_site()Johannes Ranke2-0/+0
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke2-0/+0
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke2-0/+0

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