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2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-33/+39
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-2/+2
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-4/+4
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-49/+58
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-3/+3
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-25/+34
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-9/+9
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-28/+32
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-7/+4
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke1-3/+6
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-4/+4
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-62/+51
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-1/+1
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-1/+2
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Correct and rebuild docsJohannes Ranke1-11/+16
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke1-1/+1
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-9/+17
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-3/+3
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-1/+1
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-1/+1
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-1/+1
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke1-10/+3
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-1/+1
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-2/+2
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke1-33/+33
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+3
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke1-1/+1
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-21Add the logistic modelJohannes Ranke1-1/+1
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-17/+17
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-2/+2
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-1/+1
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-2/+2
Also update test log
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke1-29/+29
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-2/+2
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-9/+17
2018-03-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-2/+5
2018-03-09Another rebuild of the static docsJohannes Ranke1-5/+2
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-8/+12

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