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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-0/+0
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-0/+0
This also adds the first benchmark results obtained on my laptop system
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke2-0/+12
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke3-0/+27
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-0/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-0/+0
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-0/+0
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-0/+0
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-0/+0
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-0/+0
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-02Better initials for error model parametersJohannes Ranke1-0/+0
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2018-03-09Another rebuild of the static docsJohannes Ranke1-0/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-0/+0
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-0/+0
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-0/+0
Again with the jranke branch of jranke/pkgdown
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-0/+0
Using branch 'jranke' on jranke/pkgdown, fixing issues hadley/pgkdown#178 and hadley/pkgdown#213 Remove plot=TRUE from mkinfit calls also in dontrun sections of examples to avoid a flood png files documenting the progress of the fit.
2016-11-17Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
2016-11-04Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
To also include the pkgdown articles
2016-11-04Rebuild docs with updated PR for pkgdownJohannes Ranke1-0/+0
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
Using pkgdown with PR hadley/pkgdown#212
2016-10-26Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0

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