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2023-05-19Prepare release of v1.2.4v1.2.4Johannes Ranke7-0/+0
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release
2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke11-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke7-0/+0
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke7-0/+0
This also adds the first benchmark results obtained on my laptop system
2022-03-02Make tests more platform independent, update docsJohannes Ranke11-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke11-0/+0
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke11-0/+0
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke11-0/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke11-0/+0
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke6-0/+0
2020-05-12Update vignettes and docsJohannes Ranke11-0/+0
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke10-0/+0
2019-07-09Adaptations for gmkinJohannes Ranke11-0/+0
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke11-0/+0
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke11-0/+0
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-0/+0
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-0/+0
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke6-0/+0
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke6-0/+0
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke11-0/+0
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke11-0/+0
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate

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