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2022-07-22Update static docsJohannes Ranke1-22/+57
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke1-1/+30
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-2/+31
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke1-11/+11
2022-07-01Update benchmark article in online docsJohannes Ranke1-64/+64
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-125/+283
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-53/+92
This also adds the first benchmark results obtained on my laptop system
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-40/+69
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-3/+23
In residual plots, use xlab and xlim if appropriate
2021-02-15Correct grant numbers in README, update docsJohannes Ranke1-11/+11
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-28/+22
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-41/+77
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-131/+268
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-219/+116
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke1-12/+12
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-85/+61
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Update pkgdownJohannes Ranke1-30/+165
2020-05-12Update vignettes and docsJohannes Ranke1-100/+89
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-145/+103
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-12/+13
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke1-12/+12
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke1-10/+10
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke1-11/+11
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke1-11/+11
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke1-35/+40
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke1-63/+79
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-80/+64
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke1-12/+12
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-12/+12
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke1-12/+12
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-63/+77
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-12/+12
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke1-11/+11
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-12/+12
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-56/+56
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke1-11/+11
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke1-13/+13
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke1-56/+56
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+292
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit

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