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2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke4-28/+37
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-85/+61
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Update pkgdownJohannes Ranke1-30/+165
2020-05-12Update vignettes and docsJohannes Ranke16-495/+432
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-145/+103
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2020-04-03Compiled models article, reduce distractionsJohannes Ranke1-108/+63
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke14-62/+37
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke4-20/+20
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke2-15/+15
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke2-16/+16
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke2-16/+16
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke4-111/+131
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke20-459/+623
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke20-627/+463
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke4-20/+20
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke4-20/+20
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke4-20/+20
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke31-131/+138
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke4-20/+20
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke5-509/+435
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke5-445/+519
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke12-201/+206
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke2-16/+16
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke2-18/+18
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke26-136/+132
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke20-374/+818
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke2-12/+12
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke3-377/+416
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke3-5/+14
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke18-5/+938
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke2-7/+7
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke2-8/+8
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke2-7/+7
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke1-6/+6
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke2-7/+7
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-5/+5
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke2-8/+8
2019-02-21Make example logistic fit quietJohannes Ranke1-6/+6
2019-02-21Add the logistic modelJohannes Ranke2-8/+8
2019-01-31Restore NAMESPACEJohannes Ranke1-5/+5
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Correct title for CAKE_exportJohannes Ranke1-6/+6
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke2-52/+52
2018-11-26Include AIC.mmkin to static docsJohannes Ranke1-5/+5
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke1-5/+5
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke2-7/+7
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-5/+5
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke2-7/+7

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