aboutsummaryrefslogtreecommitdiff
path: root/docs/articles
AgeCommit message (Collapse)AuthorFilesLines
2023-08-09Update static docsv1.2.5Johannes Ranke9-55/+2617
2023-05-19Prepare release of v1.2.4v1.2.4Johannes Ranke49-2137/+1911
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release
2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke92-516/+11684
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-11-18Update docsJohannes Ranke1-1/+1
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke33-1380/+2120
2022-10-29Merge branch 'update_online_docs_v1.1.1'Johannes Ranke1-56/+62
2022-10-29Rebuild vignette with rbenchmark installedJohannes Ranke1-56/+62
2022-08-10Update static docsJohannes Ranke1-1/+1
2022-07-22Update static docsJohannes Ranke2-23/+58
2022-07-12Rerun benchmarks on desktop computerJohannes Ranke1-1/+30
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke5-640/+663
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Sensitivity of AIC values in DMTA vignette to BLAS versionJohannes Ranke7-144/+189
2022-07-01Update benchmark article in online docsJohannes Ranke1-64/+64
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke4-227/+393
2022-06-30Merge branch 'dmta_vignette'Johannes Ranke1-8/+8
2022-06-30Remove stray sentence from vignette, update docsJohannes Ranke1-7/+7
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke26-328/+360
This also adds the first benchmark results obtained on my laptop system
2022-03-16Use saemix in help page, typo in vignetteJohannes Ranke1-2/+2
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke7-162/+123
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke65-1935/+2501
2021-10-01Update online docs to 1.0.5Johannes Ranke1-1/+1
2021-03-31Bug fix in plot.mkinfitJohannes Ranke53-54/+158
In residual plots, use xlab and xlim if appropriate
2021-02-24Rebuild docsJohannes Ranke1-1/+1
2021-02-15Correct grant numbers in README, update docsJohannes Ranke3-30/+30
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke61-250/+469
Also bump version to 1.0.3.
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke1-1/+1
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-1/+1
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke46-538/+571
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke48-786/+1070
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke18-462/+347
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke8-60/+81
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-85/+61
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Update pkgdownJohannes Ranke1-30/+165
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-0/+3
2020-05-12Update vignettes and docsJohannes Ranke22-695/+653
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke2-5/+5
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke6-263/+208
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-1/+1
Still in preparation for analytical solutions of coupled models
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke3-62/+86
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke1-1/+1
2020-04-10Improve nlme function docsJohannes Ranke1-1/+1
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2020-04-03Compiled models article, reduce distractionsJohannes Ranke1-108/+63
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+1
Also the documentation was improved here and there
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke39-802/+103
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke2-1/+2
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4

Contact - Imprint