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2020-10-15Update online docs for release versionJohannes Ranke48-786/+1070
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke18-462/+347
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke8-60/+81
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-85/+61
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Update pkgdownJohannes Ranke1-30/+165
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-0/+3
2020-05-12Update vignettes and docsJohannes Ranke22-695/+653
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke2-5/+5
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke6-263/+208
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-1/+1
Still in preparation for analytical solutions of coupled models
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke3-62/+86
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke1-1/+1
2020-04-10Improve nlme function docsJohannes Ranke1-1/+1
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2020-04-03Compiled models article, reduce distractionsJohannes Ranke1-108/+63
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+1
Also the documentation was improved here and there
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke39-802/+103
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke2-1/+2
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke8-47/+47
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke5-40/+40
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke4-40/+40
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke5-41/+41
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke9-208/+264
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke27-695/+912
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke28-928/+719
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke8-46/+46
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke8-49/+49
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke8-63/+71
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke48-176/+183
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke8-48/+48
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke8-681/+640
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke10-654/+695
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke20-288/+293
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke5-50/+43
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke4-42/+42
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke39-222/+218
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke29-624/+1121
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke4-33/+33
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke7-500/+539
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke8-26/+50
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke21-24/+958
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke6-34/+34
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke7-36/+36
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke6-35/+35
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke3-30/+30
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke6-34/+34

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