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2019-09-18Correct and rebuild docsJohannes Ranke9-208/+264
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke27-695/+912
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke28-928/+719
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke8-46/+46
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke8-49/+49
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke8-63/+71
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke48-176/+183
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke8-48/+48
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke8-681/+640
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke10-654/+695
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke20-288/+293
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke5-50/+43
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke4-42/+42
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke39-222/+218
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke29-624/+1121
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke4-33/+33
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke7-500/+539
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke8-26/+50
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke21-24/+958
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke6-34/+34
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke7-36/+36
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke6-35/+35
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke3-30/+30
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke6-34/+34
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke3-27/+27
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke7-44/+44
2019-02-21Make example logistic fit quietJohannes Ranke3-30/+30
2019-02-21Add the logistic modelJohannes Ranke6-44/+44
2019-01-31Restore NAMESPACEJohannes Ranke3-32/+32
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Correct title for CAKE_exportJohannes Ranke2-25/+25
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke7-181/+182
2018-11-26Include AIC.mmkin to static docsJohannes Ranke2-25/+25
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke2-25/+25
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke2-27/+27
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke2-24/+24
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke6-29/+29
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke2-24/+24
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke6-36/+36
2018-09-18Static documentation rebuilt by pkgdownJohannes Ranke2-34/+34
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke7-39/+39
2018-09-14Skip more tests on CRANv0.9.47.5Johannes Ranke2-25/+25
Static documentation rebuilt by pkgdown
2018-09-14Skip some more tests on CRANJohannes Ranke2-26/+26
Static documentation rebuilt by pkgdown
2018-09-14Update NEWSJohannes Ranke3-28/+28
Static documentation rebuilt by pkgdown
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke18-49/+582
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke7-33/+33
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke7-47/+47
Also update test log
2018-09-06Fixed publication date in NEWS, docs rebuiltJohannes Ranke2-24/+24
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke6-249/+249
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke7-52/+52
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke21-173/+230

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