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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-13/+30
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-11-18Update docsJohannes Ranke1-3/+3
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-5/+11
2022-08-10Update static docsJohannes Ranke1-1/+1
2022-07-22Update static docsJohannes Ranke1-3/+3
2022-07-08Store DLL info in mkinmod objects for performanceJohannes Ranke1-3/+3
Thanks to Tomas Kalibera for his analysis of the problem on the r-package-devel mailing list and for the suggestion on how to fix it. See the current benchmark vignette for the new data on mkin 1.1.1 with R 4.2.1, with unprecedented performance.
2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-1/+1
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-1/+1
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-104/+62
2021-10-01Update online docs to 1.0.5Johannes Ranke1-1/+1
2021-02-24Rebuild docsJohannes Ranke1-1/+1
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-1/+1
Also bump version to 1.0.3.
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke1-1/+1
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-1/+1
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-5/+5
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-3/+6
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-4/+1
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-0/+3
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-1/+1
Still in preparation for analytical solutions of coupled models
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-12/+21
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke1-1/+1
2020-04-10Improve nlme function docsJohannes Ranke1-1/+1
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+1
Also the documentation was improved here and there
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-1/+1
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4
2019-09-18Correct and rebuild docsJohannes Ranke1-5/+13
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+2
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-1/+1
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-0/+3
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-12/+13
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-1/+1
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Also update test log
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-1/+1
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-7/+20
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-5/+7
2018-03-09Another rebuild of the static docsJohannes Ranke1-6/+5
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-7/+11
2017-11-16Add the code used for generating synthetic_data_for_UBAJohannes Ranke1-6/+1
Static documentation except articles rebuilt by pkgdown
2017-10-10Add ORCID to DESCRIPTION, released versionv0.9.46.2Johannes Ranke1-1/+1
Static documentation except articles rebuilt by pkgdown
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-0/+3
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date

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