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2020-11-09Merge plot methods for nlme.mmkin and saem.mmkinJohannes Ranke1-1/+1
This avoids code duplication
2020-11-09Add plot method for saem.mmkin objectsJohannes Ranke1-1/+1
2020-11-09Doc improvementsJohannes Ranke1-1/+1
2020-11-09Some work on example code, pkgdown updateJohannes Ranke1-1/+1
2020-11-09Custom analytical solutions for saemixJohannes Ranke1-1/+1
Currently SFO-SFO and DFOP-SFO. Speed increase factor about 60
2020-11-08The call to saemix.predict fails with DFOP-SFOJohannes Ranke1-1/+1
2020-11-08Update static docsJohannes Ranke1-1/+1
2020-11-07Update static docs for dev versionJohannes Ranke1-1/+1
2020-11-07Create saem generic for fitting saemix modelsJohannes Ranke1-1/+1
The reasons for this decision were - Creating an saemix generic in the saemix package caused problems with roxygen, because functions like saemix.plot.xy were documented in their help files as S3 methods, although explicitly exported with @export - Creating an saemix generic in this package is possible, but would make it necessary to load samix with exclude = "saemix" in order to avoid overwriting the generic when loading saemix. - The return object of such an saemix generic in this package cannot be an S3 class with class attribute c("saemix.mmkin", "SaemixObject") similar to nlme.mmkin, as saemix returns an S4 class. - Extending the S4 class SaemixObject using simple inheritance to a class SaemixMmkinObject with additional slots did not work as expected. When the initialize method was left untouched, it prevented creation of an SaemixMmkinObject even if it was based on an initialised SaemixObject, as the initialize method seems to always be called by new(). This could potentially be circumvented by a coerce method. If an alternative initialize method was used, an SaemixMmkinObject could be created. However, the methods written for SaemixObjects only worked in some instances, either because they checked for the class, and not for class inheritance (like compare.saemix), or because the initialize method was called for some reason. Therefore, the idea of creating a derived S4 class was abandoned. - A side effect of this decision is that the introduction of the saem generic opens the possibility to use the same generic also for other backends like nlmixr with the SAEM algorithm.
2020-11-06Update benchmarks for dev versionJohannes Ranke1-1/+1
2020-11-06Fast analytical solutions for saemix, update.mmkinJohannes Ranke1-1/+1
Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-11-05Fix link and update docsJohannes Ranke1-1/+1
2020-10-27Add summary method for nlme.mmkin objectsJohannes Ranke1-1/+1
Improve and update docs
2020-10-26Put the legend in its own area for plot.nlme.mmkinJohannes Ranke1-1/+1
2020-10-24Fix a bug for nlme with parent only, improve examplesJohannes Ranke1-1/+1
2020-10-24Improve plot layoutJohannes Ranke1-1/+1
2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke1-1/+1
Update docs
2020-10-22Really fix check for nlme::varConstPropJohannes Ranke1-1/+1
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent().
2020-10-22Fix check for nlme::varConstPropJohannes Ranke1-1/+1
2020-10-22Update pkgdown docsJohannes Ranke1-1/+1
2020-10-15More gentle example for saemix with combined error modelJohannes Ranke1-1/+1
2020-10-15Updating docs of current dev versionJohannes Ranke1-6/+6
2020-10-08Fix another URL, add devcheck targetv0.9.50.3Johannes Ranke1-1/+1
2020-10-08Fix issues for releaseJohannes Ranke1-1/+1
2020-05-27Improve mkinmod docsJohannes Ranke1-1/+1
2020-05-27Change dev version label to info colorJohannes Ranke1-1/+1
instead of the orange danger color.
2020-05-27Create up to date pkgdown docs in development modeJohannes Ranke1-0/+17

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