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2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke1-1/+1
2021-09-17Put the AIC comparison in a subsubsectionJohannes Ranke1-1/+1
2021-09-16Adapt and improve the dimethenamid vignetteJohannes Ranke1-1/+1
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs
2021-08-04Improve AIC table in vignetteJohannes Ranke1-1/+1
2021-07-29Add citations to the DESCRIPTIONJohannes Ranke1-1/+1
2021-07-29Go back to 1.0.x version, update docsJohannes Ranke1-1/+1
2021-07-27Fix dimethenamid vignette problems and update docsJohannes Ranke1-1/+2
2021-06-22Update development version of online docsJohannes Ranke1-1/+1
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke1-1/+1
2021-03-09Some improvements for borderline casesJohannes Ranke1-1/+1
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-15Fully rebuild docs, rerun tests and checkJohannes Ranke1-1/+1
2021-02-13Update static docsJohannes Ranke1-1/+1
2021-02-13Rebuild docsJohannes Ranke1-1/+1
2021-02-13Update docsJohannes Ranke1-1/+1
2021-02-06Reintroduce interface to saemixJohannes Ranke1-2/+2
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-01-25Change default ylab in plot.mkinfit, explicit ylab for plot.mmkinJohannes Ranke1-1/+1
See NEWS.md. Closes #12
2021-01-11Rebuild docsJohannes Ranke1-1/+1
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke1-1/+1
2020-12-19Update docsJohannes Ranke1-1/+1
2020-12-16And add the second candidate modelJohannes Ranke1-1/+1
2020-12-16and update docsJohannes Ranke1-1/+1
2020-12-16Add printout of d24 model and update docsJohannes Ranke1-1/+1
2020-12-11Update static docsJohannes Ranke1-1/+1
2020-11-30Complete rebuild of static docs of dev versionJohannes Ranke1-1/+1
2020-11-27Update static docsJohannes Ranke1-1/+1
2020-11-19Depend on parallel, doc improvementsJohannes Ranke1-1/+1
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-11Update static docsJohannes Ranke1-1/+1
2020-11-11Add print and plot calls to the saem example codeJohannes Ranke1-1/+1
2020-11-10Digits for summary methods, print.saem.mmkinJohannes Ranke1-1/+1
2020-11-09saemix.mmkin and nlme.mmkin inherit from mixed.mmkinJohannes Ranke1-1/+1
With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.
2020-11-09Merge plot methods for nlme.mmkin and saem.mmkinJohannes Ranke1-1/+1
This avoids code duplication
2020-11-09Add plot method for saem.mmkin objectsJohannes Ranke1-1/+1
2020-11-09Doc improvementsJohannes Ranke1-1/+1
2020-11-09Some work on example code, pkgdown updateJohannes Ranke1-1/+1
2020-11-09Custom analytical solutions for saemixJohannes Ranke1-1/+1
Currently SFO-SFO and DFOP-SFO. Speed increase factor about 60
2020-11-08The call to saemix.predict fails with DFOP-SFOJohannes Ranke1-1/+1
2020-11-08Update static docsJohannes Ranke1-1/+1
2020-11-07Update static docs for dev versionJohannes Ranke1-1/+1
2020-11-07Create saem generic for fitting saemix modelsJohannes Ranke1-1/+1
The reasons for this decision were - Creating an saemix generic in the saemix package caused problems with roxygen, because functions like saemix.plot.xy were documented in their help files as S3 methods, although explicitly exported with @export - Creating an saemix generic in this package is possible, but would make it necessary to load samix with exclude = "saemix" in order to avoid overwriting the generic when loading saemix. - The return object of such an saemix generic in this package cannot be an S3 class with class attribute c("saemix.mmkin", "SaemixObject") similar to nlme.mmkin, as saemix returns an S4 class. - Extending the S4 class SaemixObject using simple inheritance to a class SaemixMmkinObject with additional slots did not work as expected. When the initialize method was left untouched, it prevented creation of an SaemixMmkinObject even if it was based on an initialised SaemixObject, as the initialize method seems to always be called by new(). This could potentially be circumvented by a coerce method. If an alternative initialize method was used, an SaemixMmkinObject could be created. However, the methods written for SaemixObjects only worked in some instances, either because they checked for the class, and not for class inheritance (like compare.saemix), or because the initialize method was called for some reason. Therefore, the idea of creating a derived S4 class was abandoned. - A side effect of this decision is that the introduction of the saem generic opens the possibility to use the same generic also for other backends like nlmixr with the SAEM algorithm.
2020-11-06Update benchmarks for dev versionJohannes Ranke1-1/+1
2020-11-06Fast analytical solutions for saemix, update.mmkinJohannes Ranke1-1/+1
Also, use logit transformation for g and for solitary formation fractions, addressing #10.
2020-11-05Fix link and update docsJohannes Ranke1-1/+1
2020-10-27Add summary method for nlme.mmkin objectsJohannes Ranke1-1/+1
Improve and update docs
2020-10-26Put the legend in its own area for plot.nlme.mmkinJohannes Ranke1-1/+1
2020-10-24Fix a bug for nlme with parent only, improve examplesJohannes Ranke1-1/+1
2020-10-24Improve plot layoutJohannes Ranke1-1/+1
2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke1-1/+1
Update docs
2020-10-22Really fix check for nlme::varConstPropJohannes Ranke1-1/+1
And add output for nlme fit translating the mkinfit error model "obs" into nlme::varIdent().
2020-10-22Fix check for nlme::varConstPropJohannes Ranke1-1/+1
2020-10-22Update pkgdown docsJohannes Ranke1-1/+1

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