mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2022-09-16	Improve docs and update pkgdown	Johannes Ranke	1	-0/+3

2022-08-10	Change dev branch used for docs, update static docs	Johannes Ranke	1	-0/+12

2022-02-28	Update docs	Johannes Ranke	1	-27/+45

2021-09-27	intervals() methods, more DFOP/tc variants	Johannes Ranke	1	-0/+6

2021-07-27	Fix dimethenamid vignette problems and update docs	Johannes Ranke	1	-0/+3

2021-06-22	Update development version of online docs	Johannes Ranke	1	-0/+3

2021-06-11	Finished 'summary.nlmixr.mmkin', checks, docs	Johannes Ranke	1	-0/+9

2021-02-06	Reintroduce interface to saemix	Johannes Ranke	1	-3/+0
	Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2020-12-19	Update docs	Johannes Ranke	1	-0/+3

2020-12-11	Update static docs	Johannes Ranke	1	-0/+3

2020-11-19	Depend on parallel, doc improvements	Johannes Ranke	1	-9/+12
	By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-09	saemix.mmkin and nlme.mmkin inherit from mixed.mmkin	Johannes Ranke	1	-3/+3
	With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.
2020-11-09	Merge plot methods for nlme.mmkin and saem.mmkin	Johannes Ranke	1	-4/+1
	This avoids code duplication
2020-11-09	Add plot method for saem.mmkin objects	Johannes Ranke	1	-0/+3

2020-11-08	Update static docs	Johannes Ranke	1	-0/+3

2020-11-07	Create saem generic for fitting saemix models	Johannes Ranke	1	-1/+1
	The reasons for this decision were - Creating an saemix generic in the saemix package caused problems with roxygen, because functions like saemix.plot.xy were documented in their help files as S3 methods, although explicitly exported with @export - Creating an saemix generic in this package is possible, but would make it necessary to load samix with exclude = "saemix" in order to avoid overwriting the generic when loading saemix. - The return object of such an saemix generic in this package cannot be an S3 class with class attribute c("saemix.mmkin", "SaemixObject") similar to nlme.mmkin, as saemix returns an S4 class. - Extending the S4 class SaemixObject using simple inheritance to a class SaemixMmkinObject with additional slots did not work as expected. When the initialize method was left untouched, it prevented creation of an SaemixMmkinObject even if it was based on an initialised SaemixObject, as the initialize method seems to always be called by new(). This could potentially be circumvented by a coerce method. If an alternative initialize method was used, an SaemixMmkinObject could be created. However, the methods written for SaemixObjects only worked in some instances, either because they checked for the class, and not for class inheritance (like compare.saemix), or because the initialize method was called for some reason. Therefore, the idea of creating a derived S4 class was abandoned. - A side effect of this decision is that the introduction of the saem generic opens the possibility to use the same generic also for other backends like nlmixr with the SAEM algorithm.
2020-10-27	Add summary method for nlme.mmkin objects	Johannes Ranke	1	-0/+3
	Improve and update docs
2020-10-24	Plot method for nlme.mmkin objects	Johannes Ranke	1	-0/+3
	Update docs
2020-10-15	Updating docs of current dev version	Johannes Ranke	1	-0/+3

2020-10-08	Fix issues for release	Johannes Ranke	1	-3/+0

2020-05-27	Create up to date pkgdown docs in development mode	Johannes Ranke	1	-0/+222