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2023-04-16Complete rebuild of static docsJohannes Ranke1-0/+3
2023-01-28Build online HTML versions of prebuilt vignettesJohannes Ranke1-0/+9
Also, give some structure to the menu for selecting articles
2023-01-09Prebuilt PDF vignettes, summary_listingJohannes Ranke1-0/+9
2022-11-24Start online docs of the development versionJohannes Ranke1-0/+3
2022-11-14Update online docsJohannes Ranke1-0/+3
2022-11-03Update docsJohannes Ranke1-0/+6
2022-10-29Update multistart docsJohannes Ranke1-0/+6
2022-10-26Don't test parhist and llhist on travis, docsJohannes Ranke1-0/+9
2022-09-16Improve multistart documentation, bugfixJohannes Ranke1-0/+9
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Improve docs and update pkgdownJohannes Ranke1-0/+3
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke1-0/+12
2022-02-28Update docsJohannes Ranke1-27/+45
2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke1-0/+6
2021-07-27Fix dimethenamid vignette problems and update docsJohannes Ranke1-0/+3
2021-06-22Update development version of online docsJohannes Ranke1-0/+3
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke1-0/+9
2021-02-06Reintroduce interface to saemixJohannes Ranke1-3/+0
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2020-12-19Update docsJohannes Ranke1-0/+3
2020-12-11Update static docsJohannes Ranke1-0/+3
2020-11-19Depend on parallel, doc improvementsJohannes Ranke1-9/+12
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-09saemix.mmkin and nlme.mmkin inherit from mixed.mmkinJohannes Ranke1-3/+3
With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.
2020-11-09Merge plot methods for nlme.mmkin and saem.mmkinJohannes Ranke1-4/+1
This avoids code duplication
2020-11-09Add plot method for saem.mmkin objectsJohannes Ranke1-0/+3
2020-11-08Update static docsJohannes Ranke1-0/+3
2020-11-07Create saem generic for fitting saemix modelsJohannes Ranke1-1/+1
The reasons for this decision were - Creating an saemix generic in the saemix package caused problems with roxygen, because functions like saemix.plot.xy were documented in their help files as S3 methods, although explicitly exported with @export - Creating an saemix generic in this package is possible, but would make it necessary to load samix with exclude = "saemix" in order to avoid overwriting the generic when loading saemix. - The return object of such an saemix generic in this package cannot be an S3 class with class attribute c("saemix.mmkin", "SaemixObject") similar to nlme.mmkin, as saemix returns an S4 class. - Extending the S4 class SaemixObject using simple inheritance to a class SaemixMmkinObject with additional slots did not work as expected. When the initialize method was left untouched, it prevented creation of an SaemixMmkinObject even if it was based on an initialised SaemixObject, as the initialize method seems to always be called by new(). This could potentially be circumvented by a coerce method. If an alternative initialize method was used, an SaemixMmkinObject could be created. However, the methods written for SaemixObjects only worked in some instances, either because they checked for the class, and not for class inheritance (like compare.saemix), or because the initialize method was called for some reason. Therefore, the idea of creating a derived S4 class was abandoned. - A side effect of this decision is that the introduction of the saem generic opens the possibility to use the same generic also for other backends like nlmixr with the SAEM algorithm.
2020-10-27Add summary method for nlme.mmkin objectsJohannes Ranke1-0/+3
Improve and update docs
2020-10-24Plot method for nlme.mmkin objectsJohannes Ranke1-0/+3
Update docs
2020-10-15Updating docs of current dev versionJohannes Ranke1-0/+3
2020-10-08Fix issues for releaseJohannes Ranke1-3/+0
2020-05-27Create up to date pkgdown docs in development modeJohannes Ranke1-0/+222

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