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2022-11-03Update docsJohannes Ranke6-1/+333
2022-11-01Update online docsJohannes Ranke29-176/+275
2022-10-29Update multistart docsJohannes Ranke18-25/+376
2022-10-26Update multistart example code and vignetteJohannes Ranke11-23/+35
2022-10-26Don't test parhist and llhist on travis, docsJohannes Ranke16-66/+722
2022-10-05Simplify the removal of random effectsJohannes Ranke1-1/+1
This is achieved by introducing the argument 'no_random_effect' to the saem function.
2022-09-28Update vignette and static docsJohannes Ranke5-19/+44
2022-09-19Improve parhist and llhistJohannes Ranke6-18/+13
In particular, adapt the display of parameter boxplots for saem fits using mkin transformations to the way used for saem fits using saemix transformations, i.e. always show parameters on the natural scale, and normalised them by dividing by the median from the multiple runs.
2022-09-16Add llhist to the multistart vignetteJohannes Ranke3-1/+9
2022-09-16Improve multistart documentation, bugfixJohannes Ranke14-27/+576
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Improve docs and update pkgdownJohannes Ranke16-414/+526
2022-08-10Update dev docsJohannes Ranke1-1/+1
2022-08-10Change dev branch used for docs, update static docsJohannes Ranke73-4156/+5578
2022-02-28Update docsJohannes Ranke56-17941/+18863
2022-01-11Update static docsnlmixrJohannes Ranke20-9255/+12062
2021-10-05Update docsJohannes Ranke17-1569/+10190
2021-09-29Reduce noise in nlmixr.mmkin output in examplesJohannes Ranke4-4143/+49
2021-09-27intervals() methods, more DFOP/tc variantsJohannes Ranke19-64/+684
2021-09-17Put the AIC comparison in a subsubsectionJohannes Ranke2-22/+26
2021-09-16Adapt and improve the dimethenamid vignetteJohannes Ranke38-352/+375
Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs
2021-08-04Improve AIC table in vignetteJohannes Ranke10-58/+70
2021-07-29Add citations to the DESCRIPTIONJohannes Ranke3-4/+9
2021-07-29Go back to 1.0.x version, update docsJohannes Ranke23-93/+99
2021-07-27Fix dimethenamid vignette problems and update docsJohannes Ranke43-1034/+1003
2021-06-22Update development version of online docsJohannes Ranke7-9289/+1018
2021-06-11Finished 'summary.nlmixr.mmkin', checks, docsJohannes Ranke47-456/+15514
2021-03-09Some improvements for borderline casesJohannes Ranke32-357/+358
- fit_with_errors for saem() - test_log_parms for mean_degparms() and saem()
2021-02-15Fully rebuild docs, rerun tests and checkJohannes Ranke176-703/+983
2021-02-13Update static docsJohannes Ranke2-6/+16
2021-02-13Rebuild docsJohannes Ranke1-1/+1
2021-02-13Update docsJohannes Ranke11-41/+49
2021-02-06Reintroduce interface to saemixJohannes Ranke36-511/+559
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-01-25Change default ylab in plot.mkinfit, explicit ylab for plot.mmkinJohannes Ranke19-34/+28
See NEWS.md. Closes #12
2021-01-11Rebuild docsJohannes Ranke8-64/+86
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke6-35/+47
2020-12-19Update docsJohannes Ranke5-17/+262
2020-12-16And add the second candidate modelJohannes Ranke2-1/+22
2020-12-16and update docsJohannes Ranke3-21/+18
2020-12-16Add printout of d24 model and update docsJohannes Ranke9-28/+47
2020-12-11Update static docsJohannes Ranke18-137/+405
2020-11-30Complete rebuild of static docs of dev versionJohannes Ranke117-2652/+949
2020-11-27Update static docsJohannes Ranke4-6/+7
2020-11-19Depend on parallel, doc improvementsJohannes Ranke132-1357/+3369
By depending on parallel instead of importing it, functions to set up and stop a cluster are always available when mkin is loaded. The use of multicore processing in mmkin on Windows is now documented in the help file, which brings mkin closer to a version 1.0 #9.
2020-11-11Update static docsJohannes Ranke6-264/+297
2020-11-11Add print and plot calls to the saem example codeJohannes Ranke12-60/+102
2020-11-10Digits for summary methods, print.saem.mmkinJohannes Ranke5-61/+76
2020-11-09saemix.mmkin and nlme.mmkin inherit from mixed.mmkinJohannes Ranke16-60/+375
With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.
2020-11-09Merge plot methods for nlme.mmkin and saem.mmkinJohannes Ranke12-23/+557
This avoids code duplication
2020-11-09Add plot method for saem.mmkin objectsJohannes Ranke9-9/+320
2020-11-09Remove outdated doc pageJohannes Ranke1-1202/+0

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