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2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-1/+0
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4
2019-10-21Refactor mkinfit, infrastructure workJohannes Ranke1-1/+4
mkinfit objects now include an ll() function to calculate the log-likelihood. Part of the code was refactored, hopefully making it easier to read and maintain. IRLS is currently the default algorithm for the error model "obs", for no particular reason. This may be subject to change when I get around to investigate. Slow tests are now in a separate subdirectory and will probably only be run by my own Makefile target. Formatting of test logs is improved. Roundtripping error model parameters works with a precision of 10% when we use lots of replicates in the synthetic data (see slow tests). This is not new in this commit, but as I think it is reasonable this closes #7.
2019-09-18Correct and rebuild docsJohannes Ranke1-8/+19
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke1-3/+4
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-2/+12
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke1-4/+5
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-10/+10
Static documentation rebuilt by pkgdown
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-7/+9
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-3/+4
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-3/+3
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-2/+18
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke1-3/+3
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+3
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke1-3/+4
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-21Add the logistic modelJohannes Ranke1-3/+4
2019-01-31Correct title for CAKE_exportJohannes Ranke1-3/+4
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-12/+13
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke1-1/+2
Static documentation rebuilt by pkgdown
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke1-3/+4
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-3/+5
2018-09-18Static documentation rebuilt by pkgdownJohannes Ranke1-0/+1
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-2/+12
2018-09-14Skip more tests on CRANv0.9.47.5Johannes Ranke1-9/+1
Static documentation rebuilt by pkgdown
2018-09-14Update NEWSJohannes Ranke1-6/+16
Static documentation rebuilt by pkgdown
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-5/+14
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-2/+12
Also update test log
2018-09-06Fixed publication date in NEWS, docs rebuiltJohannes Ranke1-3/+3
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-1/+11
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-66/+104
2018-03-21Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-0/+2
2018-03-09Another rebuild of the static docsJohannes Ranke1-1/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-2/+6
2018-02-06Skip some tests on CRAN, more quiet examplesv0.9.47.1Johannes Ranke1-0/+1
2018-02-06Prepare releaseJohannes Ranke1-3/+3
Static documentation except articles rebuilt by pkgdown
2018-02-02mkinfit: Work around a bug in the current FME versionJohannes Ranke1-0/+1
that prevented the convergence message to be returned in the case of non-convergence.
2018-02-02Show R and mkin version used for fitting in the summaryJohannes Ranke1-3/+4
For fits generated with previous version, the version numbers used for fitting were not stored in the fit object. Therefore, the versions used for fitting can only be shown for fits generated with mkin containing this commit.
2018-01-30Reweighting with two-component error modelJohannes Ranke1-0/+10
Static documentation except articles rebuilt by pkgdown
2017-11-16Update URLS in mkin vignetteJohannes Ranke1-2/+2
Static documentation except articles rebuilt by pkgdown
2017-11-16Add the code used for generating synthetic_data_for_UBAJohannes Ranke1-9/+13
Static documentation except articles rebuilt by pkgdown
2017-10-10Add ORCID to DESCRIPTION, released versionv0.9.46.2Johannes Ranke1-1/+2
Static documentation except articles rebuilt by pkgdown
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-0/+11
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2017-09-14Update NEWS, static documentation except articles rebuilt by pkgdownv0.9.46.1Johannes Ranke1-0/+10
2017-07-29Bump version, update NEWS and rebuild pkdown docsv0.9.46Johannes Ranke1-0/+19
2017-05-05Static docs except articles rebuilt with current pkgdownJohannes Ranke1-55/+60

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