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2022-07-01Add R version to data in benchmark vignetteJohannes Ranke1-2/+2
2022-06-30Merge branch 'dmta_vignette'Johannes Ranke1-1/+1
2022-06-30Remove stray sentence from vignette, update docsJohannes Ranke1-1/+1
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-2/+2
This also adds the first benchmark results obtained on my laptop system
2022-04-11Update static docsJohannes Ranke1-1/+1
2022-03-16Use saemix in help page, typo in vignetteJohannes Ranke1-1/+1
2022-03-14Reduce check time for CRAN, releasev1.1.0Johannes Ranke1-1/+1
2022-03-09Fix link to saem.mmkin from READMEJohannes Ranke1-1/+1
Thanks to Uwe Ligges for spotting this inmidst of a lot of ambiguous URL check results.
2022-03-08Avoid using multiple processes on CRAN check machinesJohannes Ranke1-1/+1
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-03Update link to 2,4-D dataJohannes Ranke1-1/+1
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-6/+7
2021-10-01Update online docs to 1.0.5Johannes Ranke1-1/+1
2021-07-29Add publication to README, update docsJohannes Ranke1-1/+1
2021-07-27Publication date for 1.0.4 in NEWS, update docsJohannes Ranke1-1/+1
2021-04-21Version 1.0.4 published yesterdayv1.0.4Johannes Ranke1-1/+1
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-1/+1
In residual plots, use xlab and xlim if appropriate
2021-02-24Clarify version status in NEWSJohannes Ranke1-1/+1
2021-02-24Rebuild docsJohannes Ranke1-1/+1
2021-02-15Don't let pkgdown add release datesJohannes Ranke1-1/+1
It didn't pick up the release of 1.0.3, and most of the other release dates were duplicated.
2021-02-15Correct grant numbers in README, update docsJohannes Ranke1-1/+1
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-1/+1
Also bump version to 1.0.3.
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke1-1/+1
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-06Increase test tolerance for parameter comparisonsv1.0.1Johannes Ranke1-1/+1
Platform dependence also revealed after upgrade to bullseye
2021-02-06Update static docsJohannes Ranke1-2/+2
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-1/+1
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-1/+1
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-6/+6
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-1/+1
2020-05-26Use all cores per default, confint toleranceJohannes Ranke1-1/+1
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-25First working version of saemix helper functionsJohannes Ranke1-1/+1
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-15Use markdown links in mkinfit documentationJohannes Ranke1-1/+1
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-14Add a parms method for mmkin objectsJohannes Ranke1-1/+1
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke1-1/+1
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-1/+1
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Another documentation updateJohannes Ranke1-1/+1
2020-05-12Update pkgdownJohannes Ranke1-1/+1
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-1/+1
2020-05-12Update vignettes and docsJohannes Ranke1-1/+1
2020-05-12Rerun tests and checks, CRAN commentsJohannes Ranke1-1/+1
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-1/+1
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-1/+1
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-1/+1
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke1-1/+1
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-1/+2
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke1-0/+3
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke1-1/+1
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown

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