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2021-07-27Publication date for 1.0.4 in NEWS, update docsJohannes Ranke1-1/+1
2021-04-21Version 1.0.4 published yesterdayv1.0.4Johannes Ranke1-1/+1
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-1/+1
In residual plots, use xlab and xlim if appropriate
2021-02-24Clarify version status in NEWSJohannes Ranke1-1/+1
2021-02-24Rebuild docsJohannes Ranke1-1/+1
2021-02-15Don't let pkgdown add release datesJohannes Ranke1-1/+1
It didn't pick up the release of 1.0.3, and most of the other release dates were duplicated.
2021-02-15Correct grant numbers in README, update docsJohannes Ranke1-1/+1
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-1/+1
Also bump version to 1.0.3.
2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke1-1/+1
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-06Increase test tolerance for parameter comparisonsv1.0.1Johannes Ranke1-1/+1
Platform dependence also revealed after upgrade to bullseye
2021-02-06Update static docsJohannes Ranke1-2/+2
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-1/+1
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-1/+1
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-6/+6
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-1/+1
2020-05-26Use all cores per default, confint toleranceJohannes Ranke1-1/+1
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-25First working version of saemix helper functionsJohannes Ranke1-1/+1
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-15Use markdown links in mkinfit documentationJohannes Ranke1-1/+1
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-14Add a parms method for mmkin objectsJohannes Ranke1-1/+1
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke1-1/+1
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke1-1/+1
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Another documentation updateJohannes Ranke1-1/+1
2020-05-12Update pkgdownJohannes Ranke1-1/+1
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-1/+1
2020-05-12Update vignettes and docsJohannes Ranke1-1/+1
2020-05-12Rerun tests and checks, CRAN commentsJohannes Ranke1-1/+1
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-1/+1
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-1/+1
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-1/+1
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke1-1/+1
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-1/+2
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke1-0/+3
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke1-1/+1
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-1/+1
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+1
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-0/+1
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-2/+2
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-10/+1
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-0/+20

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