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2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-27/+70
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-3/+6
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-10/+1
2020-05-25First working version of saemix helper functionsJohannes Ranke1-0/+6
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-0/+3
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-0/+6
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-2/+2
Still in preparation for analytical solutions of coupled models
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-26/+75
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke1-1/+1
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke1-0/+6
2020-04-15Include random effects in starting parametersJohannes Ranke1-1/+1
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke1-1/+22
2020-04-10Improve nlme function docsJohannes Ranke1-2/+2
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke1-0/+6
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-12-09Consistently use "two-component error model"Johannes Ranke1-1/+1
instead of "two component error model"
2019-11-13Calculate Akaike weightsJohannes Ranke1-0/+6
2019-11-13Likelihood ratio test for mmkin columns with two fitsJohannes Ranke1-1/+1
2019-11-09Add a lack-of-fit testJohannes Ranke1-0/+6
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+1
Also the documentation was improved here and there
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-3/+9
2019-10-31Add likelihood ratio test and other methods, fixesJohannes Ranke1-24/+42
The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added.
2019-10-26Fix checks and testsJohannes Ranke1-6/+18
Static documentation rebuilt by pkgdown
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-15/+11
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4
2019-10-21Improve some plotting routines, more testsJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-6/+0
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Correct and rebuild docsJohannes Ranke1-7/+15
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+14
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-1/+1
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+9
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-1/+3
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+33
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke1-0/+6
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-21Add the logistic modelJohannes Ranke1-0/+6
2019-01-31Correct title for CAKE_exportJohannes Ranke1-1/+1
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-11/+18
2018-11-26Include AIC.mmkin to static docsJohannes Ranke1-0/+6
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-0/+6
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-1/+1
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE

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