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2021-02-13Update for gmkin 0.6.12v1.0.2Johannes Ranke1-1/+1
mkinfit: Keep model names stored in mkinmod objects, avoiding their loss in gmkin
2021-02-04Documentation improvements, mainly fixing example codeJohannes Ranke1-8/+2
The errors in the example code were in the \dontrun sections, so they were not caught by CRAN checks. In addition, the static help files generated with pkgdown were cached, so I noticed the errors only after completely regenerating the documentation for version 1.0.0.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-27/+70
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-3/+6
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-10/+1
2020-05-25First working version of saemix helper functionsJohannes Ranke1-0/+6
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-14Update version number, better example formattingJohannes Ranke1-1/+1
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke1-0/+3
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-1/+1
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke1-1/+1
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-0/+6
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-2/+2
Still in preparation for analytical solutions of coupled models
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-26/+75
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke1-1/+1
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke1-0/+6
2020-04-15Include random effects in starting parametersJohannes Ranke1-1/+1
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke1-1/+22
2020-04-10Improve nlme function docsJohannes Ranke1-2/+2
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke1-0/+6
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-12-09Consistently use "two-component error model"Johannes Ranke1-1/+1
instead of "two component error model"
2019-11-13Calculate Akaike weightsJohannes Ranke1-0/+6
2019-11-13Likelihood ratio test for mmkin columns with two fitsJohannes Ranke1-1/+1
2019-11-09Add a lack-of-fit testJohannes Ranke1-0/+6
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+1
Also the documentation was improved here and there
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-3/+9
2019-10-31Add likelihood ratio test and other methods, fixesJohannes Ranke1-24/+42
The likelihood ratio test method is lrtest, in addition, methods for update and residuals were added.
2019-10-26Fix checks and testsJohannes Ranke1-6/+18
Static documentation rebuilt by pkgdown
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-15/+11
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+4
2019-10-21Improve some plotting routines, more testsJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-10-21Static documentation rebuilt by pkgdownJohannes Ranke1-6/+0
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Correct and rebuild docsJohannes Ranke1-7/+15
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-1/+1
Static documentation rebuilt by pkgdown
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+14
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-1/+1
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+9
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-1/+3
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+33
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke1-0/+6
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-02-21Add the logistic modelJohannes Ranke1-0/+6
2019-01-31Correct title for CAKE_exportJohannes Ranke1-1/+1
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-11/+18
2018-11-26Include AIC.mmkin to static docsJohannes Ranke1-0/+6
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-0/+6
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1

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