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2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-7/+7
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-187/+122
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-4/+4
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-3/+3
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-36/+48
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-7/+7
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-2/+2
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-10/+10
2020-05-07Another overhaul of analytical solutionsJohannes Ranke1-54/+9
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke1-3/+29
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke1-45/+80
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-25/+19
2019-09-18Correct and rebuild docsJohannes Ranke1-17/+25
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+2
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-6/+12
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-12/+6
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-5/+5
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-11/+13
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+3
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke1-3/+4
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-2/+1
2019-02-21Make example logistic fit quietJohannes Ranke1-48/+2
2019-02-21Add the logistic modelJohannes Ranke1-0/+295

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