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2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-25/+27
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-170/+122
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-1/+1
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-22/+22
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-25/+42
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-22/+33
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-10/+10
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke1-64/+49
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-10/+6
2019-09-18Correct and rebuild docsJohannes Ranke1-12/+24
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-2/+2
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-15/+30
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-30/+15
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-21/+21
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-10/+10
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-37/+38
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke1-179/+50
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke1-9/+9
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-6/+9
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-6/+6
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-7/+7
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke1-6/+6
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke1-6/+6
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-9/+9
2019-02-21Make example logistic fit quietJohannes Ranke1-6/+6
2019-02-21Add the logistic modelJohannes Ranke1-6/+6
2019-01-31Restore NAMESPACEJohannes Ranke1-2/+181
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-196/+18
2018-11-26Include AIC.mmkin to static docsJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2018-09-18Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-9/+9
2018-09-14Skip more tests on CRANv0.9.47.5Johannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-09-14Skip some more tests on CRANJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-09-14Update NEWSJohannes Ranke1-6/+6
Static documentation rebuilt by pkgdown
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-11/+11
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-15/+96
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-5/+5
Also update test log
2018-09-06Fixed publication date in NEWS, docs rebuiltJohannes Ranke1-3/+3
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3

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