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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-11/+43
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-47/+75
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-5/+5
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-199/+137
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-1/+1
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-6/+6
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-15/+15
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-23/+100
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-88/+17
2020-05-26Use all cores per default, confint toleranceJohannes Ranke1-2/+4
Also, use more intelligent starting values for the variance of the random effects for saemix. While this does not appear to speed up the convergence, it shows where this variance is greatly reduced by using mixed-effects models as opposed to the separate independent fits.
2020-05-14Update version number, better example formattingJohannes Ranke1-15/+7
2020-05-14Add a parms method for mmkin objectsJohannes Ranke1-3/+80
2020-05-12Update vignettes and docsJohannes Ranke1-22/+26
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke1-1/+1
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke1-1/+18
Also the documentation was improved here and there
2019-10-26Fix checks and testsJohannes Ranke1-0/+200
Static documentation rebuilt by pkgdown

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