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2023-11-16Update pkgdown docs to bootstrap 5 with searchJohannes Ranke1-0/+0
2023-10-30Update static docsRanke Johannes1-0/+0
2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-0/+0
In residual plots, use xlab and xlim if appropriate
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-0/+0
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-0/+0
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-0/+0
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-0/+0
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-0/+0
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-03Improve error model fittingJohannes Ranke1-0/+0
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+0
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-0/+0
2018-03-09Another rebuild of the static docsJohannes Ranke1-0/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-0/+0

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