mkin - Fitting kinetic models to chemical degradation data (also on github)

Age	Commit message (Collapse)	Author	Files	Lines
2023-04-20	Fix and rebuild documentation, see NEWS	Johannes Ranke	1	-0/+0
	I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-03-02	Make tests more platform independent, update docs	Johannes Ranke	1	-0/+0

2021-03-31	Bug fix in plot.mkinfit	Johannes Ranke	1	-0/+0
	In residual plots, use xlab and xlim if appropriate
2021-02-03	Prepare for v1.0.0v1.0.0	Johannes Ranke	1	-0/+0
	- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15	Update online docs for release version	Johannes Ranke	1	-0/+0

2020-05-11	Avoid merge() and data.frame() in cost function	Johannes Ranke	1	-0/+0
	also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-06-04	Additional algorithm "d_c", more tests, docs	Johannes Ranke	1	-0/+0
	The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08	Add functionality to plot the error model	Johannes Ranke	1	-0/+0
	by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-03	Improve error model fitting	Johannes Ranke	1	-0/+0
	Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-04-10	Adapt tests, vignettes and examples	Johannes Ranke	1	-0/+0
	- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2018-06-06	Static documentation rebuilt by pkgdown 1.1.0	Johannes Ranke	1	-0/+0

2018-03-09	Another rebuild of the static docs	Johannes Ranke	1	-0/+0
	Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01	Static documentation rebuilt using current pkgdown::build_site()	Johannes Ranke	1	-0/+0