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2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-40/+73
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-1/+3
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-1/+1
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-205/+123
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-1/+1
In residual plots, use xlab and xlim if appropriate
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-1/+1
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-2/+7
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-25/+37
2020-05-12Update vignettes and docsJohannes Ranke1-1/+1
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-30/+31
2020-04-15Include random effects in starting parametersJohannes Ranke1-4/+4
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-10Improve nlme function docsJohannes Ranke1-1/+1
2020-04-03Compiled models article, reduce distractionsJohannes Ranke1-0/+7
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke1-5/+14
2019-12-16Argument ymax for plot.mmkinJohannes Ranke1-2/+6
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-33/+43
2019-09-18Correct and rebuild docsJohannes Ranke1-16/+30
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-4/+4
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-5/+14
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-3/+3
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-0/+3
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-1/+1
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
2019-01-31Restore NAMESPACEJohannes Ranke1-2/+3
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-22/+20
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke1-1/+1
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke1-3/+3
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke1-1/+1
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke1-1/+1
Also update test log
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke1-1/+1
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke1-8/+25
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke1-0/+9
2018-03-09Another rebuild of the static docsJohannes Ranke1-8/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-9/+15
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-0/+3
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2017-05-05Static docs except articles rebuilt with current pkgdownJohannes Ranke1-39/+47
2016-12-08Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-0/+3
2016-11-21Rebuild some more topics with fix for dots argumentJohannes Ranke1-1/+1
2016-11-18Fix links in README, configure navbar, rebuild docsJohannes Ranke1-1/+1
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-6/+21
Again with the jranke branch of jranke/pkgdown
2016-11-18Improve examples for showing with pkgdownJohannes Ranke1-3/+4
- Use quiet= TRUE in dontrun sections - Use mkinsub in model definitions - Avoid \code{\link{}} in titles
2016-11-17Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-2/+2
2016-11-04Rebuild docs with updated PR for pkgdownJohannes Ranke1-5/+8
2016-11-04Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-7/+2
With updated pkgdown with my PR
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-7/+9
Using pkgdown with PR hadley/pkgdown#212
2016-10-26Complete pkgdown conf, rerun with current master branchJohannes Ranke1-8/+6
2016-10-26Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-25/+45
2016-10-06Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+156

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