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2022-11-17Complete update of online docs for v1.2.0Johannes Ranke1-12/+19
2022-07-22Update static docsJohannes Ranke1-19/+48
2022-05-18Remove outdated comment in FOCUS L vignette, update docsJohannes Ranke1-8/+8
This also adds the first benchmark results obtained on my laptop system
2022-03-07Remove nlmixr interface for release of mkin 1.1.0Johannes Ranke1-4/+4
I am postponing my attempts to get the nlmixr interface to CRAN, given some problems with nlmixr using R-devel under Windows, see https://github.com/nlmixrdevelopment/nlmixr/issues/596 and https://github.com/r-hub/rhub/issues/512, which is fixed by the removal of nlmixr from the testsuite. For the tests to be more platform independent, the biphasic mixed effects models test dataset was defined in a way that fitting should be more robust (less ill-defined).
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-233/+173
2021-02-15Improve README, introductory vignette and some other docsv1.0.3Johannes Ranke1-5/+5
Also bump version to 1.0.3.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-7/+7
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-10-15Update online docs for release versionJohannes Ranke1-14/+21
2020-05-27Add docs generated using released version 0.9.52Johannes Ranke1-6/+6
2020-05-12Update vignettes and docsJohannes Ranke1-5/+5
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke1-77/+79
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke1-13/+11
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke1-3/+3
2019-10-25Static documentation rebuilt by pkgdownJohannes Ranke1-59/+65
2019-09-19Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
Use lazy = TRUE in the pd target for generating pkgdown documentation
2019-09-18Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly
2019-09-18Add url: tag to _pkgdown.ymlJohannes Ranke1-3/+3
Static documentation rebuilt by pkgdown
2019-09-18Further corrections of the twa vignetteJohannes Ranke1-3/+3
Static documentation rebuilt by pkgdown
2019-09-18Correct and rebuild docsJohannes Ranke1-12/+20
- Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown
2019-07-09Adaptations for gmkinJohannes Ranke1-3/+3
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-6/+6
2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke1-2/+2
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke1-2/+2
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke1-5/+6
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-5/+5
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke1-3/+3
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke1-13/+17
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-17/+13
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke1-6/+6
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke1-3/+3
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke1-2/+2
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke1-6/+6
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-30/+34
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke1-3/+3
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke1-3/+3
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-2/+5
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke1-3/+3
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke1-4/+4
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke1-3/+3
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke1-3/+3
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke1-2/+2
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-3/+3
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke1-5/+5
2019-02-21Make example logistic fit quietJohannes Ranke1-2/+2
2019-02-21Add the logistic modelJohannes Ranke1-2/+2
2019-01-31Restore NAMESPACEJohannes Ranke1-1/+70
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke1-86/+16
2018-11-26Include AIC.mmkin to static docsJohannes Ranke1-3/+3
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke1-2/+2
Static documentation rebuilt by pkgdown

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