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2019-07-04Address failures of CRAN checks, improve NEWSv0.9.49.5Johannes Ranke5-21/+21
Static documentation rebuilt by pkgdown
2019-07-03Update DESCRIPTION, improve NEWSJohannes Ranke6-23/+23
Static documentation rebuilt by pkgdown
2019-06-05Add error model algorithm to outputJohannes Ranke7-39/+108
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke89-201/+474
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-08Add functionality to plot the error modelJohannes Ranke17-36/+308
by plotting squared residuals against predicted values, and showing the variance function used in the fitted error model. Rebuild docs
2019-05-07Fix hessian calculationsJohannes Ranke14-221/+300
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke15-390/+300
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-03Improve error model fittingJohannes Ranke22-277/+282
Now we have a three stage fitting process for nonconstant error models: - Unweighted least squares - Only optimize the error model - Optimize both Static documentation rebuilt by pkgdown
2019-05-02Remove reference to archived kinfit packageJohannes Ranke5-20/+20
from vignettes/mkin.Rmd Static documentation rebuilt by pkgdown
2019-05-02Prepare for CRAN releaseJohannes Ranke6-23/+21
- Skip long running tests on CRAN as well to avoid timeout on winbuilder - Don't install benchmark results in the package, they are only needed in the git repository - Don't run example in man/add_err.Rd as it takes > 10 s on winbuilder - Rebuild docs
2019-05-02Better initials for error model parametersJohannes Ranke31-175/+183
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke69-1170/+721
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2019-03-04Make some example output more reproducibleJohannes Ranke10-870/+126
In order to avoid some unnecessary documentation rebuilds
2019-03-04Review tests and examples based on winbuilder resultsJohannes Ranke14-104/+108
Static documentation rebuilt by pkgdown
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke50-53/+209
2019-02-26NAFTA SOP Attachment vignetteJohannes Ranke16-75/+310
Also: - Change rounding in print.nafta - Add dots argument to nafta() - Use cores=1 in examples - Restrict N in IORE model to values > 0
2019-02-26Static documentation rebuilt by pkgdownJohannes Ranke12-54/+309
2019-02-25Static documentation rebuilt by current pkgdownJohannes Ranke49-106/+116
2019-02-25Add plotting tests, add nafta to pkgdownJohannes Ranke9-55/+61
2019-02-22Implement the NAFTA evaluation schemeJohannes Ranke14-56/+876
2019-02-22Static documentation rebuilt by pkgdownJohannes Ranke9-57/+58
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke8-54/+54
to get the codecov badge into the docs
2019-02-21Static documentation rebuilt by pkgdownJohannes Ranke45-114/+113
2019-02-21Make example logistic fit quietJohannes Ranke9-100/+54
2019-02-21Add the logistic modelJohannes Ranke12-54/+355
2019-01-31Restore NAMESPACEJohannes Ranke32-118/+2260
which was accidentally overwritten by pkgdown -> roxygen
2019-01-31Correct title for CAKE_exportJohannes Ranke4-6/+6
Add NEWS entry. Static documentation rebuilt by pkgdown
2019-01-31Static documentation rebuilt by pkgdownJohannes Ranke44-2887/+993
2018-11-26Include AIC.mmkin to static docsJohannes Ranke9-55/+61
Static documentation rebuilt by pkgdown
2018-11-26Add AIC method for mmkin column objectsJohannes Ranke10-60/+278
Static documentation rebuilt by pkgdown
2018-11-26Further improvement of the logLik.mkinfit helpJohannes Ranke9-55/+59
Static documentation rebuilt by pkgdown
2018-11-26Static documentation rebuilt by pkgdownJohannes Ranke9-56/+84
2018-11-26Support logLik and AIC for manual weightsJohannes Ranke9-56/+59
Static documentation rebuilt by pkgdown
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke8-51/+51
2018-11-23Static documentation rebuilt by pkgdownJohannes Ranke10-57/+267
2018-09-18Static documentation rebuilt by pkgdownJohannes Ranke8-70/+110
2018-09-18Support maximum twa for HS, test, docsJohannes Ranke41-114/+114
2018-09-14Skip more tests on CRANv0.9.47.5Johannes Ranke8-56/+56
Static documentation rebuilt by pkgdown
2018-09-14Skip some more tests on CRANJohannes Ranke8-54/+54
Static documentation rebuilt by pkgdown
2018-09-14Update NEWSJohannes Ranke8-54/+54
Static documentation rebuilt by pkgdown
2018-09-14Remove two vignettes from the package but not from docsJohannes Ranke41-192/+192
- Rebuild static documentation - Adapt test to new approach to two component error model where the model is inadequate
2018-09-14Exclude more example code from CRAN checksJohannes Ranke51-187/+1286
to avoid NOTES about long execution times. Static documentation rebuilt by pkgdown with run_dont_run = TRUE
2018-09-14Static documentation rebuilt by pkgdownJohannes Ranke41-70/+71
Also update test log
2018-09-07Remove help page left after correctionJohannes Ranke1-194/+0
Unfortunately google points at this page when looking for the two component error model of Rocke and Lorenzato, while this outdated page really describes a simplified version...
2018-09-06Fixed publication date in NEWS, docs rebuiltJohannes Ranke6-21/+21
2018-09-06Static documentation rebuilt by pkgdownJohannes Ranke6-26/+27
2018-07-18Correct references to the Rocke and Lorenzato modelJohannes Ranke42-79/+291
Rename 'sigma_rl' to 'sigma_twocomp' as the Rocke and Lorenzato model assumes lognormal distribution for large y. Rebuild static documentation.
2018-06-06Static documentation rebuilt by pkgdown 1.1.0Johannes Ranke57-607/+1296
2018-03-21Static documentation rebuilt by pkgdownJohannes Ranke7-27/+29
2018-03-11Static docs rebuilt again, with current pkgdownJohannes Ranke41-22/+326

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