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2020-05-25First working version of saemix helper functionsJohannes Ranke14-25/+526
saemix_data depends on a development version of saemix, see pull request saemixdevelopment/saemixextension#2
2020-05-15Use markdown links in mkinfit documentationJohannes Ranke2-47/+49
2020-05-14Update version number, better example formattingJohannes Ranke8-22/+14
2020-05-14Add a parms method for mmkin objectsJohannes Ranke3-4/+89
2020-05-14Test markdown link, article update due to .rmd extensionJohannes Ranke11-72/+96
2020-05-13Further formatting improvement of benchmark vignetteJohannes Ranke2-86/+62
Also, use .rmd extension instead of .Rmd for vignettes.
2020-05-12Another documentation updateJohannes Ranke2-23/+23
2020-05-12Update pkgdownJohannes Ranke2-31/+166
2020-05-12Add a link to the benchmark vignette to the docsJohannes Ranke7-1/+19
2020-05-12Update vignettes and docsJohannes Ranke91-1474/+1537
2020-05-12Rerun tests and checks, CRAN commentsJohannes Ranke1-1/+1
2020-05-12Improve documentation, now using a spell checkerJohannes Ranke15-120/+114
2020-05-12Documentation improvements, rebuild static docsJohannes Ranke51-872/+908
2020-05-11Add analytical solution for DFOP-SFOJohannes Ranke8-10/+21
This is about twice as fast as deSolve compiled in the case of FOCUS D
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke21-535/+607
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2020-05-07Another overhaul of analytical solutionsJohannes Ranke19-125/+359
Still in preparation for analytical solutions of coupled models
2020-05-07Merge parent solutions to one fileJohannes Ranke7-7/+47
- Combine R/*.solution.R into R/parent_solutions.R - Create a roxygen family of related functions - Reduce redundancy by using the inherit tag - Change the parent.0 argument to parent_0 to match the corresponding parameter name used in mkinfit
2020-05-07Static documentation rebuilt by pkgdownJohannes Ranke26-798/+1157
2020-04-20Prepare release to address failed CRAN checkJohannes Ranke8-35/+38
2020-04-18Avoid assignment to .GlobalEnv for CRANJohannes Ranke4-6/+191
2020-04-17Advertise nlme related functionalityJohannes Ranke1-0/+1
2020-04-17News entry, static documentation rebuilt by pkgdownJohannes Ranke1-0/+1
2020-04-15Adapt endpoint() to also work for nlme.mmkin objectsJohannes Ranke3-11/+49
2020-04-15Include random effects in starting parametersJohannes Ranke17-84/+200
- mean_degparms() now optionally returns starting values for fixed and random effects, which makes it possible to obtain acceptable fits also in more difficult cases (with more parameters) - Fix the anova method, as it is currently not enough to inherit from lme: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17761 - Show fit information, and per default also errmin information in plot.nlme.mmkin() - Examples for nlme.mmkin: Decrease tolerance and increase the number of iterations in the PNLS step in order to be able to fit FOMC-SFO and DFOP-SFO
2020-04-15A plot method for nlme.mmkin fitsJohannes Ranke7-16/+599
2020-04-14Keep order of datasets in nlme_data, add a plotJohannes Ranke2-2/+34
2020-04-10Improve nlme function docsJohannes Ranke12-31/+119
2020-04-04Static documentation rebuilt by pkgdownJohannes Ranke6-11/+221
2020-04-03Compiled models article, reduce distractionsJohannes Ranke4-115/+85
- Added a section with platform specific notes on getting compiled models to work to the compiled models article - Don't return empty SFORB parameter list from endpoints() if there is no SFORB model - Avoid warnings when using standardized = TRUE in plot.mmkin()
2020-03-31Update NEWS, static documentation rebuilt by pkgdownv0.9.49.9Johannes Ranke1-1/+2
2020-03-31Use inline documentation for R6 class mkindsJohannes Ranke2-26/+44
2020-03-30Static documentation rebuilt by pkgdownJohannes Ranke23-217/+365
2020-01-09Remove unused FME package from DESCRIPTION textJohannes Ranke7-12/+11
2020-01-08Typos in NEWS, update static docsJohannes Ranke1-1/+1
2019-12-16Argument ymax for plot.mmkinJohannes Ranke1-2/+6
2019-12-10More additions to the READMEJohannes Ranke1-1/+1
2019-12-10Update and amend the READMEJohannes Ranke1-2/+20
2019-12-09Consistently use "two-component error model"Johannes Ranke2-5/+5
instead of "two component error model"
2019-11-13Improve formatting using markdownJohannes Ranke1-6/+6
2019-11-13Improve READMEJohannes Ranke1-3/+3
2019-11-13Calculate Akaike weightsJohannes Ranke4-0/+224
2019-11-13Likelihood ratio test for mmkin columns with two fitsJohannes Ranke2-3/+7
2019-11-09Add a lack-of-fit testJohannes Ranke9-0/+353
- Switch an example dataset in the test setup to a dataset with replicates, adapt tests - Skip the test for lrtest with an update specification as it does not only fail when pkgdown generates static help pages, but also in testthat
2019-11-05Fix standardized residual plots in 'plot_res'Johannes Ranke2-4/+5
2019-11-04Static documentation rebuilt by pkgdownJohannes Ranke9-16/+32
2019-11-04Include fixed parameters in model names in lrtestJohannes Ranke3-18/+37
2019-11-01Another documentation fixJohannes Ranke1-5/+4
2019-11-01Make the 'quadratic' the default for 'confint'Johannes Ranke13-402/+118
Also the documentation was improved here and there
2019-11-01Update link, increase tolerance of a test for Travisv0.9.49.7Johannes Ranke1-1/+1
2019-11-01Fix bug in yesterdays release, add methods for BICJohannes Ranke78-2255/+264

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